Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

70471358 .. 70475628

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG507100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTCAAGAATTATCCTACCAAACCTGTTTGTCTTCTCTTTCTGTTATTGATGTTTAGTGTATTCCTGGCCATGGCACAGAAGAAAACAACACCAGTAAATGTGGGTGTGATTCTTGAGTCGGATACATGGTTTGGGAAAATGGGGCTCAGCTGCATCAACATGGCTCTCTCTGACTTCTATGCCGTTCATGCTTACCACAATACTAGGATGGTTCTACACACAAGAGACTCCCGGAAAGAAATTGTCGTTGCAGCTGGTGCAGTGAAACAATGGCATAAATGGCTTGTCCACAAACATAGCCTAGTCAATTTCCACGACTACGACAGTGCAGTTATGTTGACCTATCTTGCAAATACAGAAAGTCCTGATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

8.93

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	153, 257
AluI	AGCT	2 cut(s)	153, 257
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	153, 254
AsuC2I	CCSGG	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	140, 266
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	207, 305
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	2 cut(s)	154, 255
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	155, 256
Bme1390I	CCNGG	2 cut(s)	68, 235
BmrFI	CCNGG	2 cut(s)	68, 235
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	140, 266
BsgI	GTGCAG	2 cut(s)	282, 351
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 260, 283
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 233
BstV1I	GCAGC	2 cut(s)	140, 266
BstV2I	GAAGAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	270, 334
CviAII	CATG	4 cut(s)	73, 129, 163, 191
CviJI	RGCY	7 cut(s)	71, 148, 153, 167, 257, 286, 303
CviKI_1	RGCY	7 cut(s)	71, 148, 153, 167, 257, 286, 303
DdeI	CTNAG	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	76, 132, 166, 194
FaiI	YATR	9 cut(s)	74, 130, 164, 183, 192, 279, 300, 338, 376
FatI	CATG	4 cut(s)	72, 128, 162, 190
Fnu4HI	GCNGC	2 cut(s)	154, 255
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	154, 255
FspBI	CTAG	2 cut(s)	207, 305
GluI	GCNGC	2 cut(s)	154, 255
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	4 cut(s)	76, 132, 166, 194
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	4 cut(s)	112, 119, 230, 371
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	292, 342
Hpy188I	TCNGA	2 cut(s)	124, 175
Hpy188III	TCNNGA	3 cut(s)	7, 116, 368
Hpy8I	GTNNAC	2 cut(s)	292, 342
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	5 cut(s)	156, 254, 263, 332, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 260, 283
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	76, 132, 166, 194
LpnPI	CCDG	6 cut(s)	39, 53, 80, 108, 243, 248
Lsp1109I	GCAGC	2 cut(s)	140, 266
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	207, 305
MboII	GAAGA	2 cut(s)	26, 94
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	3 cut(s)	10, 243, 310
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	128, 224
MmeI	TCCRAC	1 cut(s)	102
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	153, 257
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	68, 235
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	191, 260, 283
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	4 cut(s)	76, 132, 166, 194
PfeI	GAWTC	2 cut(s)	112, 371
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	155, 256
PleI	GAGTC	2 cut(s)	127, 224
PpsI	GAGTC	2 cut(s)	127, 224
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PvuII	CAGCTG	2 cut(s)	153, 257
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	154, 255
SchI	GAGTC	2 cut(s)	128, 224
ScrFI	CCNGG	2 cut(s)	68, 235
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	28, 155, 259, 347
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	10, 243, 310
SspMI	CTAG	2 cut(s)	207, 305
StyD4I	CCNGG	2 cut(s)	66, 233
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	329
TasI	AATT	3 cut(s)	10, 243, 310
TfiI	GAWTC	2 cut(s)	112, 371
TscAI	CASTG	2 cut(s)	270, 334
TseI	GCWGC	2 cut(s)	153, 254
TspDTI	ATGAA	2 cut(s)	179, 363
TspRI	CASTG	2 cut(s)	270, 334
XspI	CTAG	2 cut(s)	207, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.