Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

27582356 .. 27610236

Gene Structure 27881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATCAACAAAGTTAAGTACCCTTCCAGCCTTGAAAATAAGGTTGCTCTGTGTTCTATGTTTTTTTTGTTTCTTTCATCATCGATTTCCTTGGCTATGCCACAAAGCAAAACCATCATCCCAGTGAAGGTGGGAGTTGTTTTGGATGACCATATACATTCACGGGCTCAAAAAATTTGGTTGAGCTGCATAAAAATGGCTCTCTTTGACTTCTATGCGTCTAATGCTCATTACAAGAGTAGGGTGGTCTTGAAAGTTAGGGACTCCAAACGAAATGCTGTTCATGCAGCTGCCGCAGGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

9.96

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AciI	CCGC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	35, 253
AluBI	AGCT	3 cut(s)	186, 290, 305
AluI	AGCT	3 cut(s)	186, 290, 305
ApeKI	GCWGC	3 cut(s)	186, 287, 290
ApoI	RAATTY	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	173, 277, 299
BccI	CCATC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	3
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	4 cut(s)	187, 288, 291, 294
BlsI	GCNGC	4 cut(s)	188, 289, 292, 295
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	117, 151
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	173, 277, 299
BshVI	ATCGAT	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	117, 151
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 284, 293, 302
BstV1I	GCAGC	3 cut(s)	173, 277, 299
Bsu15I	ATCGAT	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	117, 151
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	7 cut(s)	30, 95, 167, 186, 200, 290, 305
CviKI_1	RGCY	7 cut(s)	30, 95, 167, 186, 200, 290, 305
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	287
FaiI	YATR	7 cut(s)	59, 98, 153, 155, 191, 216, 285
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	187, 288, 291, 294
FokI	GGATG	2 cut(s)	104, 158
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	187, 288, 291, 294
GluI	GCNGC	4 cut(s)	187, 288, 291, 294
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	287
HinfI	GANTC	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	33, 121
HpyCH4V	TGCA	2 cut(s)	189, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 284, 293, 302
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	3 cut(s)	40, 135, 282
Lsp1109I	GCAGC	3 cut(s)	173, 277, 299
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	2 cut(s)	122, 194
MspA1I	CMGCKG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	224, 284, 293, 302
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	188, 289, 292, 295
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	122, 194
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	4 cut(s)	187, 288, 291, 294
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	45, 132, 188, 292, 301, 307
SgeI	CNNG	9 cut(s)	39, 44, 103, 134, 174, 176, 247, 262, 296
SmiMI	CAYNNNNRTG	2 cut(s)	122, 194
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	3 cut(s)	186, 287, 290
TspDTI	ATGAA	2 cut(s)	66, 272
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.