Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

43798662 .. 43801056

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCTTGAGTGCACAGAACACAACTATTGAAGTGAATGTGGGTGTAATTCTTGACTTTGATTCAGGGAGTGGAAAACGTGGGAAAGTTTATTGGAGTTGCATGAATCTGGCCCTCTCAGACTTCTATGCATCCAATCCTCACTACAAGACTAGGTTGGTTTTGCTCCCAAGAAACTCCAAAGGAACTGTTGTTGGTGCAGCAGCAGCAGGTTCTCTCTCCTTATCTGACTTTCAACCTTATATGCTCTTGAAAAGGTCTGATATCACTTATCCAATTGAAGCCACGCACTCCAACCGCTGCAAAATTCTCATTAAAAAGAAAAACGCAATTAATTGTGTCAAACAAATGCGCTCAATAGAACGCGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

9.75

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccII	CGCG	1 cut(s)	366
AciI	CCGC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	32, 236, 253, 281
Alw21I	GWGCWC	2 cut(s)	16, 372
Alw44I	GTGCAC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	3, 111
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	4 cut(s)	200, 203, 206, 300
ApoI	RAATTY	1 cut(s)	306
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	16, 372
BbvI	GCAGC	4 cut(s)	212, 215, 218, 287
BfaI	CTAG	2 cut(s)	153, 373
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	4 cut(s)	201, 204, 207, 301
BlsI	GCNGC	4 cut(s)	202, 205, 208, 302
BmgT120I	GGNCC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	212, 215, 218, 287
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	5, 113
BsiHKAI	GWGCWC	2 cut(s)	16, 372
BsnI	GGCC	2 cut(s)	5, 113
Bsp1286I	GDGCHC	2 cut(s)	16, 372
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	2 cut(s)	5, 113
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 206
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	4 cut(s)	212, 215, 218, 287
BsuRI	GGCC	2 cut(s)	5, 113
BtsCI	GGATG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	5, 113, 284
CviKI_1	RGCY	3 cut(s)	5, 113, 284
DdeI	CTNAG	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	104, 129, 243, 245
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	201, 204, 207, 301
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	201, 204, 207, 301
FspBI	CTAG	2 cut(s)	153, 373
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	201, 204, 207, 301
HaeIII	GGCC	2 cut(s)	5, 113
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	62, 106
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	121, 229, 262
Hpy188III	TCNNGA	2 cut(s)	53, 250
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	5 cut(s)	14, 102, 131, 200, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 206
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	3 cut(s)	51, 95, 195
Lsp1109I	GCAGC	4 cut(s)	212, 215, 218, 287
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	153, 373
MaeII	ACGT	1 cut(s)	79
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	16, 372
MluCI	AATT	5 cut(s)	48, 276, 306, 330, 334
MluI	ACGCGT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	2 cut(s)	125, 150
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	2 cut(s)	315, 333
MspA1I	CMGCKG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	11, 206
NlaIII	CATG	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	62, 106
PkrI	GCNGC	4 cut(s)	202, 205, 208, 302
PshBI	ATTAAT	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	315, 333
SatI	GCNGC	4 cut(s)	201, 204, 207, 301
Sau96I	GGNCC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	16, 372
SetI	ASST	5 cut(s)	82, 158, 214, 241, 260
SfaNI	GCATC	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	5 cut(s)	48, 276, 306, 330, 334
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	153, 373
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	82
TasI	AATT	5 cut(s)	48, 276, 306, 330, 334
TfiI	GAWTC	2 cut(s)	62, 106
Tru1I	TTAA	2 cut(s)	315, 333
Tru9I	TTAA	2 cut(s)	315, 333
TseI	GCWGC	4 cut(s)	200, 203, 206, 300
TspDTI	ATGAA	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	1 cut(s)	306
XspI	CTAG	2 cut(s)	153, 373
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.