Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

365359 .. 366685

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000247.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggagaatcagaggagaagtatccttcttcttttctcatggattttcatggtcgccaccatggcagctgcaagcacaacgataatcccagtgaacgtgggagttgttgtagaccttgatggaccgagtgggaaaatgtactcgagttgcatcgaaatggcgctctcggatttctatgctatccatgctgactacaagactaggctcgttttgaacaccaggaactccaatagagatgtggttggagcagctgccgcagggaatccccagtatcttattacggggattggggagggtatggggatgaagaatgaagtcgggtatggggatggtaatttaatccccttaccctaccctccccattgccatccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

5.81

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	68, 251
AluI	AGCT	2 cut(s)	68, 251
Ama87I	CYCGRG	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	65, 68, 248, 251
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	55, 77, 238, 260
BccI	CCATC	2 cut(s)	113, 323
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	201, 373
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	66, 69, 249, 252, 255
BlsI	GCNGC	5 cut(s)	67, 70, 250, 253, 256
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	2 cut(s)	83, 262
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	2 cut(s)	83, 262
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse1I	ACTGG	2 cut(s)	89, 268
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	309, 334, 367
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	89, 268
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	55, 77, 238, 260
BsiHKCI	CYCGRG	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	89, 268
BssECI	CCNNGG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	309, 334, 367
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 185, 254
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	55, 77, 238, 260
BsuI	GTATCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	309, 334, 367
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	39, 49, 61, 185
CviJI	RGCY	3 cut(s)	68, 205, 251
CviKI_1	RGCY	3 cut(s)	68, 205, 251
CviQI	GTAC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	4 cut(s)	42, 52, 64, 188
FaiI	YATR	7 cut(s)	40, 50, 62, 177, 186, 299, 324
FatI	CATG	4 cut(s)	38, 48, 60, 184
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	66, 69, 249, 252, 255
FokI	GGATG	3 cut(s)	316, 341, 354
Fsp4HI	GCNGC	5 cut(s)	66, 69, 249, 252, 255
FspBI	CTAG	2 cut(s)	201, 373
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	66, 69, 249, 252, 255
HaeII	RGCGCY	1 cut(s)	164
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	4 cut(s)	42, 52, 64, 188
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	7, 262
Hpy166II	GTNNAC	2 cut(s)	94, 112
Hpy188I	TCNGA	2 cut(s)	12, 169
Hpy8I	GTNNAC	2 cut(s)	94, 112
HpyAV	CCTTC	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	71, 150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 185, 254
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	42, 52, 64, 188
HspAI	GCGC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	102, 205, 232, 243, 281
Lsp1109I	GCAGC	4 cut(s)	55, 77, 238, 260
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	201, 373
MaeII	ACGT	1 cut(s)	96
MboII	GAAGA	2 cut(s)	20, 319
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	6, 286, 366
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	2 cut(s)	68, 251
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	62, 185, 254
NcoI	CCATGG	1 cut(s)	60
NlaIII	CATG	4 cut(s)	42, 52, 64, 188
PaeR7I	CTCGAG	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	7, 262
PkrI	GCNGC	5 cut(s)	67, 70, 250, 253, 256
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	68, 251
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	5 cut(s)	66, 69, 249, 252, 255
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	4 cut(s)	70, 99, 117, 253
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	2 cut(s)	201, 373
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	143, 153
TaqII	GACCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	7, 262
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	4 cut(s)	65, 68, 248, 251
TspDTI	ATGAA	3 cut(s)	37, 320, 327
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	201, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.