Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

23245454 .. 23245834

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATCAAGAATCCTACCAGCCCTGTTTCATCCTTTCTCATTTTCCTTTTATTGTTTAGGAATTCCTTGGCTGCTGCCCAAAACACAATGATCCCAGTAGATGTGGGTATGATCCTTGACTTTGATTCTTTGTTTGGGAAGATTGGGCTGAGCTGCGTCAACATGGCTCTATCCGACTTCTATGCCTCTCATGCTTACTATAAAACCAGGCTGGTACTACACACAAGGGACTCCATGAGAGATGCTGTTGTTGAAGCTGCTGCAGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

90

Amino Acids

9.91

Weight (kDa)

6.0

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	85, 106
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	153, 257
AluI	AGCT	2 cut(s)	153, 257
AlwI	GGATC	2 cut(s)	85, 106
ApeKI	GCWGC	5 cut(s)	71, 74, 153, 257, 260
ApoI	RAATTY	1 cut(s)	61
BbvI	GCAGC	5 cut(s)	58, 61, 140, 244, 247
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	1 cut(s)	208
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	5 cut(s)	72, 75, 154, 258, 261
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	5 cut(s)	73, 76, 155, 259, 262
Bme1390I	CCNGG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	5 cut(s)	58, 61, 140, 244, 247
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	3, 90, 111
Bsp1720I	GCTNAGC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	85, 106
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	3, 90, 111
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	3 cut(s)	6, 93, 114
BstMBI	GATC	3 cut(s)	3, 90, 111
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	58, 61, 140, 244, 247
BtsCI	GGATG	1 cut(s)	29
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	163, 191, 235
CviJI	RGCY	7 cut(s)	21, 71, 148, 153, 167, 211, 257
CviKI_1	RGCY	7 cut(s)	21, 71, 148, 153, 167, 211, 257
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	5, 92, 113
DpnII	GATC	3 cut(s)	3, 90, 111
Eco130I	CCWWGG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	166, 194, 238
FaiI	YATR	6 cut(s)	110, 164, 183, 192, 201, 236
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	162, 190, 234
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	72, 75, 154, 258, 261
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	5 cut(s)	72, 75, 154, 258, 261
GluI	GCNGC	5 cut(s)	72, 75, 154, 258, 261
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	166, 194, 238
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	10, 125, 230, 266
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	166, 194, 238
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 90, 111
LpnPI	CCDG	6 cut(s)	31, 36, 108, 193, 197, 220
Lsp1109I	GCAGC	5 cut(s)	58, 61, 140, 244, 247
LweI	GCATC	1 cut(s)	232
MalI	GATC	3 cut(s)	5, 92, 113
MboI	GATC	3 cut(s)	3, 90, 111
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	3 cut(s)	3, 90, 111
NlaIII	CATG	3 cut(s)	166, 194, 238
PfeI	GAWTC	3 cut(s)	10, 125, 266
PkrI	GCNGC	5 cut(s)	73, 76, 155, 259, 262
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SatI	GCNGC	5 cut(s)	72, 75, 154, 258, 261
Sau3AI	GATC	3 cut(s)	3, 90, 111
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	2 cut(s)	155, 259
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	10, 125, 266
TseI	GCWGC	5 cut(s)	71, 74, 153, 257, 260
TspDTI	ATGAA	1 cut(s)	18
XapI	RAATTY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.