Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

26325762 .. 26326779

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATCCCAGTAGATGTGGGTATGATCCTTGACTTTGATTCTTTGTTTGGGAAGATTGGGCTGAGCTGCGTCAACATGGCTCTATCCGACTTCTATGCCTCTCATGCTTACTATAAAACCAGGCTGGTACTACACACAAGGGACTCCATGAGAGATGCTGTTGTTGAAGCGGCTGCAGCGTCAATCTGTGGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

5.36

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
AlwI	GGATC	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	66, 173, 176
BbvI	GCAGC	3 cut(s)	53, 160, 188
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	4 cut(s)	67, 171, 174, 177
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	4 cut(s)	68, 172, 175, 178
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	145
Bpu1102I	GCTNAGC	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	53, 160, 188
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	3, 24
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	3, 24
Bst2UI	CCWGG	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	6, 27
BstMBI	GATC	2 cut(s)	3, 24
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 176
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	53, 160, 188
CseI	GACGC	2 cut(s)	58, 168
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	76, 104, 148
CviJI	RGCY	5 cut(s)	61, 66, 80, 124, 173
CviKI_1	RGCY	5 cut(s)	61, 66, 80, 124, 173
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	5, 26
DpnII	GATC	2 cut(s)	3, 24
EcoRII	CCWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	79, 107, 151
FaiI	YATR	6 cut(s)	23, 77, 96, 105, 114, 149
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	75, 103, 147
Fnu4HI	GCNGC	4 cut(s)	67, 171, 174, 177
Fsp4HI	GCNGC	4 cut(s)	67, 171, 174, 177
FspBI	CTAG	1 cut(s)	196
GluI	GCNGC	4 cut(s)	67, 171, 174, 177
HgaI	GACGC	2 cut(s)	58, 168
Hin1II	CATG	3 cut(s)	79, 107, 151
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	38, 143
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 176
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	79, 107, 151
Kzo9I	GATC	2 cut(s)	3, 24
LpnPI	CCDG	4 cut(s)	21, 106, 110, 133
Lsp1109I	GCAGC	3 cut(s)	53, 160, 188
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	196
MalI	GATC	2 cut(s)	5, 26
MboI	GATC	2 cut(s)	3, 24
MboII	GAAGA	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	104, 176
NdeII	GATC	2 cut(s)	3, 24
NlaIII	CATG	3 cut(s)	79, 107, 151
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	68, 172, 175, 178
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SatI	GCNGC	4 cut(s)	67, 171, 174, 177
Sau3AI	GATC	2 cut(s)	3, 24
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	174
SgeI	CNNG	9 cut(s)	20, 41, 88, 116, 132, 133, 137, 150, 160
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	119
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	38
TseI	GCWGC	3 cut(s)	66, 173, 176
XspI	CTAG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.