Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

5863662 .. 5864722

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCCTCAAGGACTTTTATGCTTCTCATTCTCACTACAGAACGAGGCTGGTTTTGAACATTAGGGACTGCAAAAAGGAGATTGTTGGTGCAGCTGCCGCAGCTCTAGATCTGATTAAGAATGAACAAGTGCAAGCCATCATGGGGCCAGTGACATCAATGGAGACGAGCTTTGTCATTAATCTTGGAAAGCAAGCTCATGTCCCCATTATCTCATTTTCTGCCACAAGCTCTTCTCTTACTTCAGTCCGCAGCCCTTACTTTTTCCAATTTGCACAGAATGAATCAACCCAAGTGAAAGCCATTAGTTCCATAGTAAAAGCTTTCGGGTGGAGACAAGTTGTGCCCATCTACATCGACAGTGAGTATGGAGAGGGATTCATGCCATATTTAACTGATGCCTTAAAAGAGGCTGAGGCCTATATTCCCTACCGCAGTGTCATTTCCCCATATGCCACTGATGATCAAGTTCAAATCGAGCTTTACAAGTTAATGACAATGCAAAACAGTCTTCTTTCTCCACATGAAATCCATCTTAGCTCCAGGTGTGGAAAACTGGAAACTTATGTCCTGTTGACAAAAGAGATTCAAGAGTTCTTACCACGGTGGAAGAGGCAGTCCCATGAAGACGCTGCAACCGCCATCTTTGCTGCTAACTTGGATGTTTTTGGACTTTGGGCTCATGATGCTGCTATTGCACTAGCCATAGCTGTTGAAGGAGTAATTGGGAGTACTAGTTATGGCCTCCAAAAGTCAGATGCTGTTATCAACTCAACAGATCTTTCTAATCTTTGGTTCAAAACTGCTCAAAGCCTTGTCGAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

275

Amino Acids

30.57

Weight (kDa)

5.81

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 167	5e-40	Receptor family ligand binding region
Peripla_BP_6	PF13458	2 - 154	7.5e-15	Periplasmic binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	99, 250, 433, 639
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	58, 473, 590, 716, 799
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	9 cut(s)	95, 104, 171, 197, 231, 323, 481, 540, 710
AluI	AGCT	9 cut(s)	95, 104, 171, 197, 231, 323, 481, 540, 710
Alw26I	GTCTC	2 cut(s)	158, 328
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	4 cut(s)	3, 146, 417, 742
ApeKI	GCWGC	7 cut(s)	92, 95, 101, 252, 632, 650, 689
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	4, 146
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	682
BbsI	GAAGAC	2 cut(s)	503, 633
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	7 cut(s)	82, 104, 113, 264, 619, 637, 676
BccI	CCATC	4 cut(s)	146, 356, 540, 650
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	158, 328
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	3 cut(s)	107, 701, 735
BfmI	CTRYAG	1 cut(s)	37
BglII	AGATCT	2 cut(s)	109, 778
BisI	GCNGC	8 cut(s)	93, 96, 99, 102, 253, 633, 651, 690
BlsI	GCNGC	8 cut(s)	94, 97, 100, 103, 254, 634, 652, 691
BmcAI	AGTACT	1 cut(s)	733
Bme1390I	CCNGG	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	4, 146
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	388, 676, 748
BpiI	GAAGAC	2 cut(s)	503, 633
BpmI	CTGGAG	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	149, 561
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	149, 561
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	7 cut(s)	82, 104, 113, 264, 619, 637, 676
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	5, 148, 419, 744
BslFI	GGGAC	3 cut(s)	80, 188, 604
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	158, 328
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	80, 188, 604
BsnI	GGCC	4 cut(s)	5, 148, 419, 744
Bsp1286I	GDGCHC	2 cut(s)	348, 682
Bsp143I	GATC	3 cut(s)	109, 463, 778
BspACI	CCGC	4 cut(s)	99, 250, 433, 639
BspANI	GGCC	4 cut(s)	5, 148, 419, 744
BspCNI	CTCAG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	149, 561
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	3 cut(s)	109, 463, 778
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	3 cut(s)	362, 509, 606
Bst6I	CTCTTC	2 cut(s)	238, 605
BstC8I	GCNNGC	2 cut(s)	135, 195
BstDEI	CTNAG	2 cut(s)	414, 536
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	3 cut(s)	112, 466, 781
BstMAI	GTCTC	2 cut(s)	158, 328
BstMBI	GATC	3 cut(s)	109, 463, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 101, 638, 647, 686, 695
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	7 cut(s)	82, 104, 113, 264, 619, 637, 676
BstV2I	GAAGAC	2 cut(s)	503, 633
BstX2I	RGATCY	2 cut(s)	109, 778
BstYI	RGATCY	2 cut(s)	109, 778
BsuRI	GGCC	4 cut(s)	5, 148, 419, 744
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	4 cut(s)	156, 367, 442, 456
Cac8I	GCNNGC	2 cut(s)	135, 195
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	4, 146
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	6 cut(s)	142, 200, 382, 524, 623, 683
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	2 cut(s)	414, 536
DpnI	GATC	3 cut(s)	111, 465, 780
DpnII	GATC	3 cut(s)	109, 463, 778
Eam1104I	CTCTTC	2 cut(s)	238, 605
EarI	CTCTTC	2 cut(s)	238, 605
Eco147I	AGGCCT	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	145, 203, 385, 527, 626, 686
FaqI	GGGAC	3 cut(s)	80, 188, 604
FatI	CATG	6 cut(s)	141, 199, 381, 523, 622, 682
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	8 cut(s)	93, 96, 99, 102, 253, 633, 651, 690
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	8 cut(s)	93, 96, 99, 102, 253, 633, 651, 690
FspBI	CTAG	3 cut(s)	107, 701, 735
GluI	GCNGC	8 cut(s)	93, 96, 99, 102, 253, 633, 651, 690
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	4 cut(s)	5, 148, 419, 744
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	6 cut(s)	145, 203, 385, 527, 626, 686
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	3 cut(s)	284, 378, 586
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	2 cut(s)	114, 757
Hpy188III	TCNNGA	3 cut(s)	107, 590, 683
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	3 cut(s)	362, 509, 606
HpyCH4V	TGCA	7 cut(s)	72, 92, 133, 275, 502, 635, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 101, 638, 647, 686, 695
HpyF3I	CTNAG	2 cut(s)	414, 536
Hsp92II	CATG	6 cut(s)	145, 203, 385, 527, 626, 686
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	109, 463, 778
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	545
LpnPI	CCDG	6 cut(s)	35, 162, 529, 542, 556, 584
Lsp1109I	GCAGC	7 cut(s)	82, 104, 113, 264, 619, 637, 676
LweI	GCATC	3 cut(s)	388, 676, 748
MaeI	CTAG	3 cut(s)	107, 701, 735
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	111, 465, 780
MboI	GATC	3 cut(s)	109, 463, 778
MboII	GAAGA	4 cut(s)	225, 503, 622, 638
MflI	RGATCY	2 cut(s)	109, 778
MhlI	GDGCHC	2 cut(s)	348, 682
MluCI	AATT	2 cut(s)	269, 723
MnlI	CCTC	7 cut(s)	17, 39, 367, 403, 409, 606, 755
MseI	TTAA	5 cut(s)	117, 180, 392, 404, 491
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	6 cut(s)	98, 101, 638, 647, 686, 695
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	3 cut(s)	109, 463, 778
NlaIII	CATG	6 cut(s)	145, 203, 385, 527, 626, 686
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	284, 378, 586
PkrI	GCNGC	8 cut(s)	94, 97, 100, 103, 254, 634, 652, 691
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	4, 146
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	109, 778
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	117, 180, 392, 404, 491
SatI	GCNGC	8 cut(s)	93, 96, 99, 102, 253, 633, 651, 690
Sau3AI	GATC	3 cut(s)	109, 463, 778
Sau96I	GGNCC	2 cut(s)	4, 146
ScaI	AGTACT	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	2 cut(s)	348, 682
SfaNI	GCATC	3 cut(s)	388, 676, 748
SfcI	CTRYAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	2 cut(s)	269, 723
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	4 cut(s)	99, 250, 433, 639
SspMI	CTAG	3 cut(s)	107, 701, 735
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	3 cut(s)	362, 509, 606
TaqI	TCGA	3 cut(s)	357, 477, 819
TasI	AATT	2 cut(s)	269, 723
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	284, 378, 586
Tru1I	TTAA	5 cut(s)	117, 180, 392, 404, 491
Tru9I	TTAA	5 cut(s)	117, 180, 392, 404, 491
TscAI	CASTG	4 cut(s)	156, 367, 442, 463
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	7 cut(s)	92, 95, 101, 252, 632, 650, 689
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	138, 297, 370, 540, 639
TspRI	CASTG	4 cut(s)	156, 367, 442, 463
VspI	ATTAAT	1 cut(s)	180
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	3 cut(s)	107, 701, 735
ZrmI	AGTACT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.