Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

27104983 .. 27105638

Gene Structure 656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATCATGAAGAACCATACAAATATCAACACCATCCTTGTTCCTTTTATATTTTTCTTTGTTCTGTTTTCATGGATTTTCATTGCCATGAAAGCACAGAACACAACTATTCGAGTGAATGTGGGGGTTATTCTTGACTTTGATTCAGGGAGCAAAAAAACTGATAAGTTTTATTGGAGTTGCATGAATCTGGCCCTCTCAGACTTCTATGCATCCAATCCTCACTACAAGACTAGGCTAGTTTTGCTCCCAGGAAACTCCAGAGGAACTATTGTTGGTGCAGCTGCTGCAGTATATGGTTGCTCTACATATGTCAATGGAGGCACGTCTATCCCATTTCAAGGTAGAGCTTTGTACAAGGCGTCCATGTGCTGCAGCCTAGTAGTTTTTATAAACTTAAATGTTGTGCACTCAACTAAATCTAATAATCTAGTCGTTTCAGATGAATTGCTGATTAAACTCTTTAAGATTAATATGTCGGTATATTTTTTACTTGGATCATTTTCTTCGTCTTCTTTTTTTCTGTTAAAAAAAAAAAAGGTTACTAAATCTCCTAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

9.8

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AclWI	GGATC	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	284, 350
AluI	AGCT	2 cut(s)	284, 350
Alw21I	GWGCWC	1 cut(s)	411
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	5 cut(s)	281, 284, 287, 372, 375
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	271, 274, 293, 359, 387
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	4 cut(s)	234, 239, 380, 431
BfmI	CTRYAG	2 cut(s)	288, 373
BisI	GCNGC	5 cut(s)	282, 285, 288, 373, 376
BlsI	GCNGC	5 cut(s)	283, 286, 289, 374, 377
Bme1390I	CCNGG	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	33, 212
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	5 cut(s)	271, 274, 293, 359, 387
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	3, 497
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	292, 377
BspPI	GGATC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	3, 497
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	33, 212
BstKTI	GATC	2 cut(s)	6, 500
BstMBI	GATC	2 cut(s)	3, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 244, 287
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	2 cut(s)	288, 373
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	5 cut(s)	271, 274, 293, 359, 387
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	33, 212
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	5 cut(s)	7, 72, 88, 184, 367
CviJI	RGCY	5 cut(s)	194, 238, 284, 350, 378
CviKI_1	RGCY	5 cut(s)	194, 238, 284, 350, 378
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	2 cut(s)	5, 499
DpnII	GATC	2 cut(s)	3, 497
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	5 cut(s)	10, 75, 91, 187, 370
FatI	CATG	5 cut(s)	6, 71, 87, 183, 366
FauNDI	CATATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	282, 285, 288, 373, 376
FokI	GGATG	2 cut(s)	20, 199
Fsp4HI	GCNGC	5 cut(s)	282, 285, 288, 373, 376
FspBI	CTAG	4 cut(s)	234, 239, 380, 431
GluI	GCNGC	5 cut(s)	282, 285, 288, 373, 376
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	194
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	5 cut(s)	10, 75, 91, 187, 370
HinfI	GANTC	2 cut(s)	143, 187
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	202, 442
Hpy188III	TCNNGA	3 cut(s)	7, 134, 261
Hpy8I	GTNNAC	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	183, 212, 281, 290, 375, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 244, 287
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	326
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	5 cut(s)	10, 75, 91, 187, 370
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 497
LmnI	GCTCC	2 cut(s)	150, 252
LpnPI	CCDG	5 cut(s)	132, 176, 237, 264, 274
Lsp1109I	GCAGC	5 cut(s)	271, 274, 293, 359, 387
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	4 cut(s)	234, 239, 380, 431
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	2 cut(s)	5, 499
MboI	GATC	2 cut(s)	3, 497
MboII	GAAGA	3 cut(s)	22, 498, 504
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	446
MnlI	CCTC	4 cut(s)	206, 231, 257, 314
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	5 cut(s)	398, 456, 465, 471, 527
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	92, 244, 287
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	3, 497
NlaIII	CATG	5 cut(s)	10, 75, 91, 187, 370
NsiI	ATGCAT	1 cut(s)	214
PagI	TCATGA	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	143, 187
PkrI	GCNGC	5 cut(s)	283, 286, 289, 374, 377
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	2 cut(s)	292, 377
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	5 cut(s)	398, 456, 465, 471, 527
SatI	GCNGC	5 cut(s)	282, 285, 288, 373, 376
Sau3AI	GATC	2 cut(s)	3, 497
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	286, 329, 346, 352, 543
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	2 cut(s)	288, 373
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	446
SspMI	CTAG	4 cut(s)	234, 239, 380, 431
StyD4I	CCNGG	1 cut(s)	250
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	446
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	143, 187
Tru1I	TTAA	5 cut(s)	398, 456, 465, 471, 527
Tru9I	TTAA	5 cut(s)	398, 456, 465, 471, 527
TseI	GCWGC	5 cut(s)	281, 284, 287, 372, 375
TspDTI	ATGAA	6 cut(s)	23, 60, 70, 104, 200, 459
VneI	GTGCAC	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	471
XspI	CTAG	4 cut(s)	234, 239, 380, 431
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.