Rh4CG130500

Glutamate-gated receptor that probably acts as non- selective cation channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000721
Physical Location & Seq
Forward (+)
25657712 .. 25660919
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG130500.1

Sequence Viewer

Length: 390 bp
ATGGCAAACCAGAAGCATTTCCTCTGGTTCATCTTCATTGTTTTGTTCATCCCTGGGATCGAGCCTTCAACGACAAAAGAGGTGATACGAGTACCAGTAGGAGTTGTTCTTAACTTAAATTCCTCAGTGGGAGCTATGGCAGAGAACTGCATGACCATGGCACTTGATGATTTCTATGCTAAGCATGCTCATTATCAAACAAGGCTTTTCTTTCTCACCAGGGATTCAAAGAATGATGTTGTTTCAGCAGCATTTGAAGGTCTAGCAGCTGCACCTGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAAAACAATCTTGGACATGATGAAAATGAAAATCTTTCATCAGGGCATACGGATTCATCTATGCCT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

130

Amino Acids

14.21

Weight (kDa)

5.13

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 3 cut(s) 69, 228, 257
AjnI CCWGG 3 cut(s) 52, 218, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 2 cut(s) 134, 269
AluI AGCT 2 cut(s) 134, 269
AlwI GGATC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 248, 266, 269
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 94, 208
BbvI GCAGC 3 cut(s) 256, 260, 278
BciT130I CCWGG 3 cut(s) 54, 220, 276
BfaI CTAG 1 cut(s) 263
BisI GCNGC 3 cut(s) 249, 267, 270
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 3 cut(s) 250, 268, 271
Bme1390I CCNGG 3 cut(s) 54, 220, 276
BmrFI CCNGG 3 cut(s) 54, 220, 276
Bpu1102I GCTNAGC 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 52, 53, 156, 219
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 3 cut(s) 54, 220, 276
BseDI CCNNGG 4 cut(s) 52, 53, 156, 219
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 138, 315
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 256, 260, 278
BsgI GTGCAG 1 cut(s) 255
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 137, 314
BspPI GGATC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 4 cut(s) 52, 53, 156, 219
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 54, 220, 276
Bst4CI ACNGT 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 124, 180, 301
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 185, 278
BstNI CCWGG 3 cut(s) 54, 220, 276
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 52, 218, 274
BstV1I GCAGC 3 cut(s) 256, 260, 278
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 132, 327
Cac8I GCNNGC 1 cut(s) 186
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 1 cut(s) 92
CviAII CATG 4 cut(s) 151, 157, 185, 341
CviJI RGCY 4 cut(s) 64, 134, 205, 269
CviKI_1 RGCY 4 cut(s) 64, 134, 205, 269
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 3 cut(s) 124, 180, 301
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 3 cut(s) 52, 218, 274
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 154, 160, 188, 344
FatI CATG 4 cut(s) 150, 156, 184, 340
Fnu4HI GCNGC 3 cut(s) 249, 267, 270
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 249, 267, 270
FspBI CTAG 1 cut(s) 263
GluI GCNGC 3 cut(s) 249, 267, 270
Hin1II CATG 4 cut(s) 154, 160, 188, 344
HinfI GANTC 2 cut(s) 224, 377
HphI GGTGA 2 cut(s) 94, 208
HpyAV CCTTC 2 cut(s) 75, 251
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 3 cut(s) 150, 272, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 278
HpyF3I CTNAG 3 cut(s) 124, 180, 301
Hsp92II CATG 4 cut(s) 154, 160, 188, 344
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 3 cut(s) 256, 260, 278
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 1 cut(s) 263
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 118
MnlI CCTC 3 cut(s) 32, 73, 133
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 111, 116
MslI CAYNNNNRTG 2 cut(s) 155, 320
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 54, 220, 276
MvaI CCWGG 3 cut(s) 54, 220, 276
MwoI GCNNNNNNNGC 2 cut(s) 185, 278
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 57
NlaIII CATG 4 cut(s) 154, 160, 188, 344
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PasI CCCWGGG 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 224, 377
PkrI GCNGC 3 cut(s) 250, 268, 271
Psp6I CCWGG 3 cut(s) 52, 218, 274
PspGI CCWGG 3 cut(s) 52, 218, 274
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 2 cut(s) 155, 320
SaqAI TTAA 2 cut(s) 111, 116
SatI GCNGC 3 cut(s) 249, 267, 270
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 3 cut(s) 54, 220, 276
SetI ASST 5 cut(s) 84, 136, 262, 271, 277
SexAI ACCWGGT 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 155, 320
SphI GCATGC 1 cut(s) 188
Sse9I AATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 52, 218, 274
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 118
TfiI GAWTC 2 cut(s) 224, 377
Tru1I TTAA 2 cut(s) 111, 116
Tru9I TTAA 2 cut(s) 111, 116
TscAI CASTG 2 cut(s) 132, 327
TseI GCWGC 3 cut(s) 248, 266, 269
TspDTI ATGAA 7 cut(s) 19, 25, 37, 351, 360, 366, 369
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 2 cut(s) 132, 327
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.