Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

27496823 .. 27498014

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATCAGAAAAAACTCCACCAACCTTGTTCTTTCTGTCATTTTCTTGTTCCTTTCTTCATGGATTTGCTTGGCCATGGCACAAAACAAGGCCAGTATCCCAGTTAATGTGGGTGTTGTTCTTAACCTTAATAGACTATATGGAAAGATTTGGTTGAGCTGCATCAAAATTGCGCTCTCAGATTTCTATGCTTCTCATGCTCACTACAAGACTAGGCTGGTCTTGAACATTCGGAACTCCAAGGAAAATGTTGTTGGCGCAGCTGCTGCAGGTTCTCCTCCCTATCATTGGCATTCTTTAGATCTGATAAAGTATGCACAAGTGCAAGCAATCCTAGGGCCAGTAACATCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

118

Amino Acids

13.07

Weight (kDa)

9.88

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	2 cut(s)	159, 263
AluI	AGCT	2 cut(s)	159, 263
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	72, 90, 338
ApeKI	GCWGC	4 cut(s)	159, 260, 263, 266
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	175, 260
AspS9I	GGNCC	1 cut(s)	338
AvrII	CCTAGG	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	146, 250, 253, 272
BciVI	GTATCC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	213, 335
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	160, 261, 264, 267
BlnI	CCTAGG	1 cut(s)	334
BlsI	GCNGC	4 cut(s)	161, 262, 265, 268
BmgT120I	GGNCC	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	75, 240, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	3 cut(s)	93, 101, 341
BseDI	CCNNGG	3 cut(s)	75, 240, 334
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	3 cut(s)	93, 101, 341
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	146, 250, 253, 272
BshFI	GGCC	3 cut(s)	74, 92, 340
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	74, 92, 340
Bsp143I	GATC	2 cut(s)	3, 301
Bsp19I	CCATGG	1 cut(s)	75
BspANI	GGCC	3 cut(s)	74, 92, 340
BspCNI	CTCAG	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	93, 101, 341
BssECI	CCNNGG	3 cut(s)	75, 240, 334
BssMI	GATC	2 cut(s)	3, 301
BssT1I	CCWWGG	3 cut(s)	75, 240, 334
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	175, 260
BstKTI	GATC	2 cut(s)	6, 304
BstMBI	GATC	2 cut(s)	3, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 266
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	146, 250, 253, 272
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	74, 92, 340
BtgI	CCRYGG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	2 cut(s)	175, 260
Cfr13I	GGNCC	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	3 cut(s)	60, 76, 197
CviJI	RGCY	6 cut(s)	74, 92, 159, 217, 263, 340
CviKI_1	RGCY	6 cut(s)	74, 92, 159, 217, 263, 340
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	5, 303
DpnII	GATC	2 cut(s)	3, 301
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	75, 240, 334
EcoT14I	CCWWGG	3 cut(s)	75, 240, 334
ErhI	CCWWGG	3 cut(s)	75, 240, 334
FaeI	CATG	3 cut(s)	63, 79, 200
FaiI	YATR	7 cut(s)	61, 77, 139, 141, 189, 198, 315
FatI	CATG	3 cut(s)	59, 75, 196
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	160, 261, 264, 267
Fsp4HI	GCNGC	4 cut(s)	160, 261, 264, 267
FspBI	CTAG	2 cut(s)	213, 335
GlaI	GCGC	2 cut(s)	174, 259
GluI	GCNGC	4 cut(s)	160, 261, 264, 267
HaeIII	GGCC	3 cut(s)	74, 92, 340
HhaI	GCGC	2 cut(s)	175, 260
Hin1II	CATG	3 cut(s)	63, 79, 200
Hin6I	GCGC	2 cut(s)	173, 258
HinP1I	GCGC	2 cut(s)	173, 258
Hpy188I	TCNGA	4 cut(s)	8, 181, 234, 306
Hpy188III	TCNNGA	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	162, 269, 317, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 266
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	63, 79, 200
HspAI	GCGC	2 cut(s)	173, 258
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 301
LpnPI	CCDG	4 cut(s)	106, 114, 203, 255
Lsp1109I	GCAGC	4 cut(s)	146, 250, 253, 272
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	213, 335
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	5, 303
MboI	GATC	2 cut(s)	3, 301
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	3 cut(s)	105, 123, 129
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	197, 266
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	3, 301
NlaIII	CATG	3 cut(s)	63, 79, 200
PctI	GAATGC	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	161, 262, 265, 268
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	105, 123, 129
SatI	GCNGC	4 cut(s)	160, 261, 264, 267
Sau3AI	GATC	2 cut(s)	3, 301
Sau96I	GGNCC	1 cut(s)	338
SetI	ASST	5 cut(s)	27, 129, 161, 265, 274
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	213, 335
StyI	CCWWGG	3 cut(s)	75, 240, 334
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	105, 123, 129
Tru9I	TTAA	3 cut(s)	105, 123, 129
TseI	GCWGC	4 cut(s)	159, 260, 263, 266
TspDTI	ATGAA	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	213, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.