Rorug06G0051400

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
7228332 .. 7232391
4060 bp
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UTR
Exon/CDS
Intron
Rorug06G0051400.1

Sequence Viewer

Length: 285 bp
ATGACTGAAGGTTGGTTGCCTATAATTGACATTCCAAAAGCAGATATTGGGAACAGTGAACTATCAATGTTTGCAAGTATTTTGAATTCAGGATACCCTTTTGATTTCTGTTTATCCGTTTTCCTAAAGCTTGATGATTATGTTATGTTTAAAAATGTTTCAGTCTTTTGTGTTTCAGCTGCTACTGTTACTTTTGCTGCAGCTCCTGCTGTTGGTGCAACTGATTTAGTTGTTGTGAGATTAGTCTACAAGTTTGTGGTTTTTTCCTTTGGTCCATATTGTTGA

Protein Analysis

94

Amino Acids

10.26

Weight (kDa)

4.41

Isoelectric Point (pI)

21.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 3 cut(s) 130, 179, 203
AluI AGCT 3 cut(s) 130, 179, 203
AlwNI CAGNNNCTG 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 179, 197, 200
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 166, 184, 212
BciVI GTATCC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 3 cut(s) 180, 198, 201
BlsI GCNGC 3 cut(s) 181, 199, 202
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 212
BseXI GCAGC 3 cut(s) 166, 184, 212
BslI CCNNNNNNNGG 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 56, 187
BstAPI GCANNNNNTGC 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 166, 184, 212
BsuI GTATCC 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 272
CviJI RGCY 3 cut(s) 130, 179, 203
CviKI_1 RGCY 3 cut(s) 130, 179, 203
DraI TTTAAA 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 85
FaiI YATR 4 cut(s) 23, 141, 146, 277
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 180, 198, 201
Fsp4HI GCNGC 3 cut(s) 180, 198, 201
GluI GCNGC 3 cut(s) 180, 198, 201
HindIII AAGCTT 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 59, 247
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 2 cut(s) 59, 247
HpyCH4III ACNGT 2 cut(s) 56, 187
HpyCH4V TGCA 3 cut(s) 74, 200, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 75, 219
Lsp1109I GCAGC 3 cut(s) 166, 184, 212
MaeIII GTNAC 1 cut(s) 187
MluCI AATT 2 cut(s) 24, 85
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
PkrI GCNGC 3 cut(s) 181, 199, 202
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 180, 198, 201
Sau96I GGNCC 1 cut(s) 272
SetI ASST 4 cut(s) 13, 132, 181, 205
SfcI CTRYAG 1 cut(s) 198
SgeI CNNG 5 cut(s) 87, 102, 143, 218, 262
SinI GGWCC 1 cut(s) 272
Sse9I AATT 2 cut(s) 24, 85
TaaI ACNGT 2 cut(s) 56, 187
TasI AATT 2 cut(s) 24, 85
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 61
TseI GCWGC 3 cut(s) 179, 197, 200
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.