Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

9085328 .. 9103843

Gene Structure 18516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCAATGATTATCCCAATGAATGTGGGCATTGTTCTTGACGAACTTTATTGGTTGAGTGGGGAGATTTGGCTGAGCAGCATCAAAATTGTTTTTTCAGACTTATATGCTTCTCATGGTTACTACAACACCAGGCAGGTTTTGAACATTTGGGAATTTAAACAAGATGTTGCTAGTGAAGCTGACGCAGATACAGGGGTTCGTAAGGCCAAAAGATCTATTATACTTCGCGAGCCTGACATAAGGAAAGACAATGGTTTAGCTATTGTGCCTGTTGAAGAGCAGATGCCTAGCAAGAGAGTGATGAACAGATGGGAGAGGAAAGCTCAGGTCTTGAAACTAACGTACAGGGATGGGAACATAATGAAAAGCAGCAAGAAGCAAGATGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

131

Amino Acids

15.12

Weight (kDa)

9.15

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccII	CGCG	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	145, 278, 337
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	182, 263, 326
AluI	AGCT	3 cut(s)	182, 263, 326
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	78, 372
ApoI	RAATTY	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BbvI	GCAGC	2 cut(s)	90, 384
BccI	CCATC	3 cut(s)	306, 347, 380
BciT130I	CCWGG	1 cut(s)	133
BfaI	CTAG	2 cut(s)	174, 291
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	79, 373
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	80, 374
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	90, 276
BplI	GAGNNNNNCTC	2 cut(s)	310, 342
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	65, 341
BseXI	GCAGC	2 cut(s)	90, 384
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	215
Bsp1720I	GCTNAGC	1 cut(s)	74
Bsp68I	TCGCGA	1 cut(s)	231
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	66, 340
BspFNI	CGCG	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	273
BssMI	GATC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	74, 327
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	90, 384
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	358
BtuMI	TCGCGA	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	233
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	73, 182, 209, 235, 263, 326
CviKI_1	RGCY	6 cut(s)	73, 182, 209, 235, 263, 326
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	74, 327
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	119
FaiI	YATR	7 cut(s)	106, 108, 117, 224, 242, 362, 394
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	79, 373
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	79, 373
FspBI	CTAG	2 cut(s)	174, 291
GluI	GCNGC	2 cut(s)	79, 373
HaeIII	GGCC	1 cut(s)	209
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	38, 230, 334
HpyCH4IV	ACGT	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	74, 327
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	118, 122, 145, 180, 249, 285, 314, 334
Lsp1109I	GCAGC	2 cut(s)	90, 384
LweI	GCATC	2 cut(s)	90, 276
MaeI	CTAG	2 cut(s)	174, 291
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	2 cut(s)	87, 155
MnlI	CCTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	119
NruI	TCGCGA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	80, 374
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	215
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	79, 373
Sau3AI	GATC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	6 cut(s)	141, 184, 265, 328, 333, 347
SfaNI	GCATC	2 cut(s)	90, 276
Sse9I	AATT	2 cut(s)	87, 155
SspMI	CTAG	2 cut(s)	174, 291
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	347
TasI	AATT	2 cut(s)	87, 155
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	2 cut(s)	78, 372
TspDTI	ATGAA	3 cut(s)	35, 320, 380
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	2 cut(s)	174, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.