Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

70440231 .. 70444435

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG506800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGAATCCTACCAACATGATTTCCCTGGCATTGGCACAGAACACAACAATTCCAATAAATGTGGGTGTGGTTCTTGACTTGGATACCCAATTTGGCAAAATGGGGCTAAGCTGCATCAACATGGCCCTCTCTGATTTCTATGCCTCTCATGCTTACTACAGTACTAGGCTTGTCCTACACACCAGGGACTCCTCGAAAGATGTTGTTGTTGCAGCTGGTGCAGACACTAATTCTTCCGCGAGGGCATCAAGTGCGAACCGCATTGACTCACACATTGATCTTGAACAGCATGTCCGGACTGAGCATGCTGACTTGAATCCCAACACTCAAGCAACCCAAGAGATTGAAGATGCAATTGACTTGACCTCCTCCAGTGAACAGAGGCCAGTGCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

133

Amino Acids

14.47

Weight (kDa)

4.84

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	2 cut(s)	240, 262
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	287, 319, 350
AjnI	CCWGG	2 cut(s)	27, 185
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	114, 218
AluI	AGCT	2 cut(s)	114, 218
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	2 cut(s)	126, 386
ApeKI	GCWGC	2 cut(s)	114, 215
AspS9I	GGNCC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	101, 227
BciT130I	CCWGG	2 cut(s)	29, 187
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	115, 216
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	2 cut(s)	116, 217
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	29, 187
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	29, 187
BmsI	GCATC	3 cut(s)	126, 257, 343
BpmI	CTGGAG	1 cut(s)	358
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	27, 186
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	375, 389
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	29, 187
BseDI	CCNNGG	2 cut(s)	27, 186
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	375, 389
BseRI	GAGGAG	2 cut(s)	184, 361
BseXI	GCAGC	2 cut(s)	101, 227
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	128, 388
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	128, 388
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	280
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	240, 262
BspANI	GGCC	2 cut(s)	128, 388
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	375, 389
BssECI	CCNNGG	2 cut(s)	27, 186
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	29, 187
Bst4CI	ACNGT	1 cut(s)	164
BstAPI	GCANNNNNTGC	2 cut(s)	221, 254
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	110, 303
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 221, 254
BstNI	CCWGG	2 cut(s)	29, 187
BstNSI	RCATGY	2 cut(s)	296, 311
BstSCI	CCNGG	2 cut(s)	27, 185
BstSFI	CTRYAG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	101, 227
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	128, 388
BtsIMutI	CAGTG	2 cut(s)	382, 396
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	5 cut(s)	19, 124, 152, 293, 308
CviJI	RGCY	6 cut(s)	109, 114, 128, 172, 218, 388
CviKI_1	RGCY	6 cut(s)	109, 114, 128, 172, 218, 388
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	110, 303
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	27, 185
FaeI	CATG	5 cut(s)	22, 127, 155, 296, 311
FaiI	YATR	6 cut(s)	20, 125, 144, 153, 294, 309
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	5 cut(s)	18, 123, 151, 292, 307
Fnu4HI	GCNGC	2 cut(s)	115, 216
Fsp4HI	GCNGC	2 cut(s)	115, 216
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	115, 216
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	128, 388
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	5 cut(s)	22, 127, 155, 296, 311
HinfI	GANTC	4 cut(s)	7, 191, 269, 319
HpaII	CCGG	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	77, 284, 298
Hpy8I	GTNNAC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	117, 215, 224, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 221, 254
HpyF3I	CTNAG	2 cut(s)	110, 303
Hsp92II	CATG	5 cut(s)	22, 127, 155, 296, 311
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	14, 41, 172, 199, 204, 311, 388
Lsp1109I	GCAGC	2 cut(s)	101, 227
LweI	GCATC	3 cut(s)	126, 257, 343
MaeI	CTAG	1 cut(s)	168
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	228, 362
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	4 cut(s)	51, 92, 232, 357
MlyI	GAGTC	2 cut(s)	185, 263
MnlI	CCTC	7 cut(s)	140, 157, 205, 237, 378, 379, 382
MroI	TCCGGA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	29, 187
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	29, 187
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	152, 221, 254
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	5 cut(s)	22, 127, 155, 296, 311
NspI	RCATGY	2 cut(s)	296, 311
PaeI	GCATGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	7, 319
PkrI	GCNGC	2 cut(s)	116, 217
PleI	GAGTC	2 cut(s)	185, 263
PpsI	GAGTC	2 cut(s)	185, 263
Psp6I	CCWGG	2 cut(s)	27, 185
PspGI	CCWGG	2 cut(s)	27, 185
PspPI	GGNCC	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	115, 216
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	2 cut(s)	185, 263
ScrFI	CCNGG	2 cut(s)	29, 187
SetI	ASST	3 cut(s)	116, 220, 371
SfaNI	GCATC	3 cut(s)	126, 257, 343
SfcI	CTRYAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	4 cut(s)	51, 92, 232, 357
SsiI	CCGC	2 cut(s)	240, 262
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	27, 185
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	197
TasI	AATT	4 cut(s)	51, 92, 232, 357
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	7, 319
TscAI	CASTG	2 cut(s)	382, 396
TseI	GCWGC	2 cut(s)	114, 215
TspRI	CASTG	2 cut(s)	382, 396
XceI	RCATGY	2 cut(s)	296, 311
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.