Rorug01G0176000

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000721
Physical Location & Seq
Forward (+)
23921755 .. 23924400
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0176000.1

Sequence Viewer

Length: 1002 bp
ATGAATCAGTGGCTAGATTTTATCAAAAACAGAACTAGTCCATCATTTAAGGAAATGTCTAAAAAATTCAAAGCAATGCGCGCAGAAAGAACCTTACTCCACAGAACTAGTAGAAAAAGCTTTGCTCGTGTTGAAGAAGAATTAAGGGAACAAAGTGAAATCCCAGATGCAATAACAAGGTCTGATGTTTGGATTCATGCTTACGAAGCAAAGAAGAAGGATTCAGATGTAGTGGAGGATCCAGAAATAGTGAAACAAGTGAAAATGTATAGAGCTGACCAAGAACCTTCAGAGAAATGTTCTTTGAAAGATGATGCTGTTGCAAAAGTACTCGGTCCTGATCCACGAGGACGAGTAAGAGGTTTGGGATTTGGAGCAGTCCCTTCAAAGGCAGATTATCAAACCAGTGTTGGAAACAAAGTTGCTAAGTTAGAGAATGCTTTATTTTCTCAATCACAAGATATGCTTGCTCAATCACAAGAGATCGAACGATTGAAAGAGGTGGTTGGAACTATTTTGGCACGGACAGAGAGAGAGGGGAATAACCATGGAAGTACTAGTGGTCAGCATTCTGGTAATGCGCTTTCACAACAAAAAGATAAGGAAAATACAAGTGTGAGTGTGCGGAATTCTGAAACTGGGAGAGGACAAATCAAGCTCAATAAACAGAACTTAAGTGTTCAACATTCTGTTGATGAGGGGCTGCAGACCAAAGAAAAGGAAGGTGCAAGGACCAAGGGCATTAAGAATGATCATAGTAGAGTTGAGTTATTAAATTGGTTTCAAATGGGAGAAGAGGTTGTTGCAAGTGCAAAACTTGAGTCAAAGGATCCGACTGCAATGGTCCATCACATGCCTCTGGGCCAAGAATGTTGGAAAGTTTGGGTTCTTGATGTTTTGGAGGATATAGCTTTGTATCGACCAACGAGAGAGTTTGGAACGCTAAGTATGGCTCAAGGAAGTACAATTGCATGGCCTATCAAGTACATCAAGCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

333

Amino Acids

37.59

Weight (kDa)

8.82

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 125 3.7e-17 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 264 - 332 1.9e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 625
AclWI GGATC 5 cut(s) 233, 246, 335, 824, 837
AcsI RAATTY 2 cut(s) 65, 628
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 4 cut(s) 330, 556, 964, 986
AfiI CCNNNNNNNGG 1 cut(s) 388
AflII CTTAAG 1 cut(s) 673
AgsI TTSAA 7 cut(s) 70, 134, 307, 387, 496, 683, 785
AhlI ACTAGT 3 cut(s) 35, 107, 557
AluBI AGCT 5 cut(s) 120, 275, 658, 911, 994
AluI AGCT 5 cut(s) 120, 275, 658, 911, 994
AlwI GGATC 5 cut(s) 233, 246, 335, 824, 837
AoxI GGCC 2 cut(s) 862, 974
ApeKI GCWGC 1 cut(s) 703
ApoI RAATTY 2 cut(s) 65, 628
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 3 cut(s) 81, 83, 583
AspS9I GGNCC 4 cut(s) 335, 732, 844, 862
AvaII GGWCC 3 cut(s) 335, 732, 844
BamHI GGATCC 2 cut(s) 238, 829
BauI CACGAG 2 cut(s) 126, 345
BbvI GCAGC 1 cut(s) 690
BccI CCATC 2 cut(s) 49, 855
BclI TGATCA 1 cut(s) 751
BcuI ACTAGT 3 cut(s) 35, 107, 557
BfaI CTAG 5 cut(s) 14, 36, 108, 558, 995
BfmI CTRYAG 1 cut(s) 704
BfrI CTTAAG 1 cut(s) 673
BisI GCNGC 1 cut(s) 704
BlsI GCNGC 1 cut(s) 705
BmcAI AGTACT 2 cut(s) 330, 556
Bme18I GGWCC 3 cut(s) 335, 732, 844
BmgT120I GGNCC 4 cut(s) 335, 732, 844, 862
BmiI GGNNCC 2 cut(s) 240, 831
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 157, 304
BmuI ACTGGG 1 cut(s) 648
BpuEI CTTGAG 2 cut(s) 839, 939
BsaJI CCNNGG 2 cut(s) 547, 735
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 405, 643
Bse3DI GCAATG 2 cut(s) 81, 846
BseDI CCNNGG 2 cut(s) 547, 735
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 81, 846
BseNI ACTGG 2 cut(s) 405, 643
BsePI GCGCGC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 864, 976
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 2 cut(s) 442, 568
BsnI GGCC 2 cut(s) 864, 976
Bsp143I GATC 5 cut(s) 238, 340, 483, 751, 829
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 1 cut(s) 625
BspANI GGCC 2 cut(s) 864, 976
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 240, 831
BspMAI CTGCAG 1 cut(s) 708
BspPI GGATC 5 cut(s) 233, 246, 335, 824, 837
BspTI CTTAAG 1 cut(s) 673
BsrDI GCAATG 2 cut(s) 81, 846
BsrI ACTGG 2 cut(s) 405, 643
BssECI CCNNGG 2 cut(s) 547, 735
BssHII GCGCGC 1 cut(s) 79
BssMI GATC 5 cut(s) 238, 340, 483, 751, 829
BssSI CACGAG 2 cut(s) 126, 345
BssT1I CCWWGG 2 cut(s) 547, 735
Bst2BI CACGAG 2 cut(s) 126, 345
Bst6I CTCTTC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 81, 468
BstDEI CTNAG 2 cut(s) 426, 944
BstDSI CCRYGG 1 cut(s) 547
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 3 cut(s) 81, 83, 583
BstKTI GATC 5 cut(s) 241, 343, 486, 754, 832
BstMBI GATC 5 cut(s) 238, 340, 483, 751, 829
BstMWI GCNNNNNNNGC 2 cut(s) 80, 206
BstNSI RCATGY 1 cut(s) 856
BstSFI CTRYAG 1 cut(s) 704
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 238, 829
BstYI RGATCY 2 cut(s) 238, 829
BsuRI GGCC 2 cut(s) 864, 976
BtgI CCRYGG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 14, 412
Cac8I GCNNGC 2 cut(s) 81, 468
CfoI GCGC 3 cut(s) 81, 83, 583
Cfr13I GGNCC 4 cut(s) 335, 732, 844, 862
Csp6I GTAC 4 cut(s) 329, 555, 963, 985
CviAII CATG 4 cut(s) 197, 548, 853, 972
CviQI GTAC 4 cut(s) 329, 555, 963, 985
DdeI CTNAG 2 cut(s) 426, 944
DpnI GATC 5 cut(s) 240, 342, 485, 753, 831
DpnII GATC 5 cut(s) 238, 340, 483, 751, 829
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 2 cut(s) 547, 735
Eco47I GGWCC 3 cut(s) 335, 732, 844
Eco57I CTGAAG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 547, 735
ErhI CCWWGG 2 cut(s) 547, 735
FaeI CATG 4 cut(s) 200, 551, 856, 975
FaiI YATR 9 cut(s) 198, 270, 464, 549, 756, 854, 908, 950, 973
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 196, 547, 852, 971
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 1 cut(s) 704
Fsp4HI GCNGC 1 cut(s) 704
FspBI CTAG 5 cut(s) 14, 36, 108, 558, 995
GlaI GCGC 3 cut(s) 80, 82, 582
GluI GCNGC 1 cut(s) 704
HaeIII GGCC 2 cut(s) 864, 976
HhaI GCGC 3 cut(s) 81, 83, 583
Hin1II CATG 4 cut(s) 200, 551, 856, 975
Hin6I GCGC 3 cut(s) 79, 81, 581
HinP1I GCGC 3 cut(s) 79, 81, 581
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 4 cut(s) 4, 193, 221, 821
Hpy188I TCNGA 5 cut(s) 184, 226, 292, 634, 834
Hpy188III TCNNGA 3 cut(s) 242, 338, 890
HpyAV CCTTC 4 cut(s) 211, 297, 393, 716
HpyCH4V TGCA 8 cut(s) 170, 323, 706, 728, 806, 812, 839, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 206
HpyF3I CTNAG 2 cut(s) 426, 944
Hsp92II CATG 4 cut(s) 200, 551, 856, 975
HspAI GCGC 3 cut(s) 79, 81, 581
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 238, 340, 483, 751, 829
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 7 cut(s) 177, 255, 351, 418, 558, 624, 845
Lsp1109I GCAGC 1 cut(s) 690
LweI GCATC 2 cut(s) 157, 304
MaeI CTAG 5 cut(s) 14, 36, 108, 558, 995
MalI GATC 5 cut(s) 240, 342, 485, 753, 831
MboI GATC 5 cut(s) 238, 340, 483, 751, 829
MboII GAAGA 4 cut(s) 146, 149, 226, 806
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 2 cut(s) 238, 829
MluCI AATT 5 cut(s) 65, 140, 628, 775, 966
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 4 cut(s) 391, 487, 854, 857
MseI TTAA 5 cut(s) 48, 143, 674, 744, 773
MspCI CTTAAG 1 cut(s) 673
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 2 cut(s) 442, 568
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 80, 206
NcoI CCATGG 1 cut(s) 547
NdeII GATC 5 cut(s) 238, 340, 483, 751, 829
NlaIII CATG 4 cut(s) 200, 551, 856, 975
NlaIV GGNNCC 2 cut(s) 240, 831
NspI RCATGY 1 cut(s) 856
PauI GCGCGC 1 cut(s) 79
PctI GAATGC 2 cut(s) 442, 568
PfeI GAWTC 3 cut(s) 4, 193, 221
PkrI GCNGC 1 cut(s) 705
PleI GAGTC 1 cut(s) 829
PpsI GAGTC 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 240, 831
PspPI GGNCC 4 cut(s) 335, 732, 844, 862
PstI CTGCAG 1 cut(s) 708
PsuI RGATCY 2 cut(s) 238, 829
PteI GCGCGC 1 cut(s) 79
RsaI GTAC 4 cut(s) 330, 556, 964, 986
RsaNI GTAC 4 cut(s) 329, 555, 963, 985
SaqAI TTAA 5 cut(s) 48, 143, 674, 744, 773
SatI GCNGC 1 cut(s) 704
Sau3AI GATC 5 cut(s) 238, 340, 483, 751, 829
Sau96I GGNCC 4 cut(s) 335, 732, 844, 862
ScaI AGTACT 2 cut(s) 330, 556
SchI GAGTC 1 cut(s) 830
SfaNI GCATC 2 cut(s) 157, 304
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 3 cut(s) 335, 732, 844
SmlI CTYRAG 3 cut(s) 673, 818, 954
SmoI CTYRAG 3 cut(s) 673, 818, 954
SpeI ACTAGT 3 cut(s) 35, 107, 557
Sse9I AATT 5 cut(s) 65, 140, 628, 775, 966
SsiI CCGC 1 cut(s) 625
SspMI CTAG 5 cut(s) 14, 36, 108, 558, 995
StyI CCWWGG 2 cut(s) 547, 735
TaqI TCGA 2 cut(s) 486, 919
TaqII GACCGA 1 cut(s) 323
TasI AATT 5 cut(s) 65, 140, 628, 775, 966
TatI WGTACW 4 cut(s) 328, 554, 962, 984
TfiI GAWTC 3 cut(s) 4, 193, 221
Tru1I TTAA 5 cut(s) 48, 143, 674, 744, 773
Tru9I TTAA 5 cut(s) 48, 143, 674, 744, 773
TscAI CASTG 2 cut(s) 14, 412
TseI GCWGC 1 cut(s) 703
TspDTI ATGAA 2 cut(s) 17, 185
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 2 cut(s) 14, 412
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 335, 732, 844
XapI RAATTY 2 cut(s) 65, 628
XceI RCATGY 1 cut(s) 856
XspI CTAG 5 cut(s) 14, 36, 108, 558, 995
ZrmI AGTACT 2 cut(s) 330, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.