Rh4AG121700

Glutamate-gated receptor that probably acts as non- selective cation channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000721
Physical Location & Seq
Forward (+)
26320873 .. 26323964
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG121700.1

Sequence Viewer

Length: 408 bp
ATGGCAGAGAACTGCATGACCATGGCACTTGATGATTTTTATGCTAAGCATGCTCATTATCAAACAAGGCTTTCCCTTCTCACCAGCGATTCAAAGAATGATGTTGTTTCAGCAGCAGTTGAAGCGTTGCGAACTGAGAGCACATTTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGTACATGCTTCAGACACTCCTGATGAAGGTCTAGCAGCTGCACCTGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAAAACAATCTTGGACATGATGAAAATGAAAATCTTTCATCAGGGCATACGGATTCATCTATGCCTGTACTCGACTCATCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

135

Amino Acids

14.86

Weight (kDa)

5.09

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 275
AfaI GTAC 2 cut(s) 231, 390
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 93, 122, 164
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 113, 263, 266
AsuHPI GGTGA 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 125, 253, 275
BciT130I CCWGG 1 cut(s) 273
BfaI CTAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 114, 264, 267
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 3 cut(s) 115, 265, 268
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 126, 312
BseXI GCAGC 3 cut(s) 125, 253, 275
BsgI GTGCAG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 190
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 127, 311
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 45, 135, 298
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 252
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 50, 122, 275
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 53, 236
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 125, 253, 275
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 2 cut(s) 230, 389
CviAII CATG 5 cut(s) 16, 22, 50, 233, 338
CviJI RGCY 2 cut(s) 70, 266
CviKI_1 RGCY 2 cut(s) 70, 266
CviQI GTAC 2 cut(s) 230, 389
DdeI CTNAG 3 cut(s) 45, 135, 298
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 5 cut(s) 19, 25, 53, 236, 341
FatI CATG 5 cut(s) 15, 21, 49, 232, 337
Fnu4HI GCNGC 3 cut(s) 114, 264, 267
Fsp4HI GCNGC 3 cut(s) 114, 264, 267
FspBI CTAG 1 cut(s) 260
GluI GCNGC 3 cut(s) 114, 264, 267
Hin1II CATG 5 cut(s) 19, 25, 53, 236, 341
HinfI GANTC 4 cut(s) 89, 221, 374, 395
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 225, 248
HpyAV CCTTC 2 cut(s) 86, 248
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 15, 269, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 122, 275
HpyF3I CTNAG 3 cut(s) 45, 135, 298
Hsp92II CATG 5 cut(s) 19, 25, 53, 236, 341
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 7 cut(s) 97, 258, 261, 285, 288, 348, 399
Lsp1109I GCAGC 3 cut(s) 125, 253, 275
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 260
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 389
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 20, 317
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 50, 122, 275
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 190
NlaIII CATG 5 cut(s) 19, 25, 53, 236, 341
NspI RCATGY 2 cut(s) 53, 236
PaeI GCATGC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 89, 221, 374
PkrI GCNGC 3 cut(s) 115, 265, 268
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 231, 390
RsaNI GTAC 2 cut(s) 230, 389
RseI CAYNNNNRTG 2 cut(s) 20, 317
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 114, 264, 267
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 259, 268, 274
SexAI ACCWGGT 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 20, 317
SphI GCATGC 1 cut(s) 53
Sse9I AATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 393
TasI AATT 1 cut(s) 155
TatI WGTACW 2 cut(s) 229, 388
TfiI GAWTC 3 cut(s) 89, 221, 374
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 324
TseI GCWGC 3 cut(s) 113, 263, 266
TspDTI ATGAA 5 cut(s) 267, 348, 357, 363, 366
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 252
XceI RCATGY 2 cut(s) 53, 236
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.