Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

35700367 .. 35720636

Gene Structure 20270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGCTCGTTGGAGAATCAGAAGAGGAGGATCAGTATCATCCTTGTTCTTTTCTCATGGATTTTCATGGTGGCCGCCATGGCAGCTGAAAACACATTAACAATCCCAGTGAACGTGGGAGTTATTGTAGACCTTGATGAAGTGAGTGGGAAGATGTATTTGAGCTGCATAGAAATGGCGCTCTCAGACTTCTATGCTTCCCATGCTCAATACAAGACTAGGGTCGTTTTGAACACCAGTAACTCCCACGAAGATGTCGTTGGTGCAGCTGATGCAGGTGAGGTTTCTTTGCCAGGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCCGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGGAGTCATTGGTGAAGTGCCTGATATTATACTCAGATGTGTTAGTCGAGATGAGGCCGCCTTGGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAATGCTGACTGCGATTCGTGATGTTTGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGGTATGCACTATTACACTGGCAGATATTGTTTACGCAGTCCGGCCCTCCCCTTTGAATCATGTTCTTTTTTTCTTGTTTCTTTTTCTCCAGAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

277

Amino Acids

30.34

Weight (kDa)

5.02

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	92 - 170	4.2e-08	NUDIX domain
ARM_Cnot1	PF25097	174 - 249	1.5e-13	Cnot1 ARM repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	129, 451
AciI	CCGC	2 cut(s)	75, 597
AclWI	GGATC	3 cut(s)	38, 365, 378
AcoI	YGGCCR	2 cut(s)	72, 492
AfaI	GTAC	2 cut(s)	438, 635
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	232, 404, 475, 625, 790
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	7 cut(s)	6, 86, 165, 269, 379, 709, 724
AluI	AGCT	7 cut(s)	6, 86, 165, 269, 379, 709, 724
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	3 cut(s)	38, 365, 378
AoxI	GGCC	4 cut(s)	72, 492, 594, 776
ApeKI	GCWGC	4 cut(s)	83, 165, 266, 721
AspLEI	GCGC	2 cut(s)	181, 668
AspS9I	GGNCC	1 cut(s)	777
AsuHPI	GGTGA	3 cut(s)	290, 341, 563
BamHI	GGATCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	95, 152, 278, 733
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	309
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	3 cut(s)	219, 674, 729
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	266
BglI	GCCNNNNNGGC	2 cut(s)	80, 602
BisI	GCNGC	6 cut(s)	75, 84, 166, 267, 597, 722
BlsI	GCNGC	6 cut(s)	76, 85, 167, 268, 598, 723
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	262, 505
BmuI	ACTGGG	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	78, 522, 600
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	107, 237, 756
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	78, 522, 600
BseGI	GGATG	2 cut(s)	39, 328
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	3 cut(s)	198, 419, 586
BseNI	ACTGG	3 cut(s)	107, 237, 756
BseRI	GAGGAG	3 cut(s)	40, 323, 371
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	95, 152, 278, 733
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	4 cut(s)	74, 494, 596, 778
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	491, 775
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	309
BsmI	GAATGC	2 cut(s)	470, 646
BsnI	GGCC	4 cut(s)	74, 494, 596, 778
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	30, 370
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	75, 597
BspANI	GGCC	4 cut(s)	74, 494, 596, 778
BspCNI	CTCAG	3 cut(s)	197, 420, 585
BspLI	GGNNCC	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	38, 365, 378
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	107, 237, 756
BssECI	CCNNGG	3 cut(s)	78, 522, 600
BssMI	GATC	2 cut(s)	30, 370
BssNAI	GTATAC	1 cut(s)	452
BssT1I	CCWWGG	3 cut(s)	78, 522, 600
Bst1107I	GTATAC	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	480, 707
BstDEI	CTNAG	4 cut(s)	184, 375, 428, 572
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	39, 328
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	181, 668
BstKTI	GATC	2 cut(s)	33, 373
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	30, 370
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 83, 203, 272, 602, 674
BstNI	CCWGG	1 cut(s)	294
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	4 cut(s)	95, 152, 278, 733
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	452
BstZI	CGGCCG	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	74, 494, 596, 778
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	39, 328
BtsIMutI	CAGTG	3 cut(s)	114, 393, 749
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	480, 707
CfoI	GCGC	2 cut(s)	181, 668
Cfr13I	GGNCC	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	437, 634
CviAII	CATG	6 cut(s)	57, 67, 79, 203, 659, 794
CviQI	GTAC	2 cut(s)	437, 634
DdeI	CTNAG	4 cut(s)	184, 375, 428, 572
DpnI	GATC	2 cut(s)	32, 372
DpnII	GATC	2 cut(s)	30, 370
EaeI	YGGCCR	2 cut(s)	72, 492
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	492
Eco130I	CCWWGG	3 cut(s)	78, 522, 600
Eco24I	GRGCYC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	3 cut(s)	78, 522, 600
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	78, 522, 600
FaeI	CATG	6 cut(s)	60, 70, 82, 206, 662, 797
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FatI	CATG	6 cut(s)	56, 66, 78, 202, 658, 793
FblI	GTMKAC	2 cut(s)	129, 451
Fnu4HI	GCNGC	6 cut(s)	75, 84, 166, 267, 597, 722
FokI	GGATG	2 cut(s)	26, 335
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	75, 84, 166, 267, 597, 722
FspBI	CTAG	3 cut(s)	219, 674, 729
GlaI	GCGC	2 cut(s)	180, 667
GluI	GCNGC	6 cut(s)	75, 84, 166, 267, 597, 722
GsuI	CTGGAG	1 cut(s)	806
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	74, 494, 596, 778
HapII	CCGG	2 cut(s)	491, 775
HhaI	GCGC	2 cut(s)	181, 668
Hin1II	CATG	6 cut(s)	60, 70, 82, 206, 662, 797
Hin6I	GCGC	2 cut(s)	179, 666
HinP1I	GCGC	2 cut(s)	179, 666
HindIII	AAGCTT	2 cut(s)	377, 707
HinfI	GANTC	6 cut(s)	16, 503, 543, 655, 691, 790
HpaII	CCGG	2 cut(s)	491, 775
HphI	GGTGA	3 cut(s)	290, 341, 563
Hpy166II	GTNNAC	4 cut(s)	112, 130, 452, 766
Hpy188I	TCNGA	3 cut(s)	21, 187, 575
Hpy188III	TCNNGA	4 cut(s)	401, 587, 695, 823
Hpy8I	GTNNAC	4 cut(s)	112, 130, 452, 766
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	6 cut(s)	168, 266, 275, 644, 705, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 83, 203, 272, 602, 674
HpyF3I	CTNAG	4 cut(s)	184, 375, 428, 572
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	60, 70, 82, 206, 662, 797
HspAI	GCGC	2 cut(s)	179, 666
Kzo9I	GATC	2 cut(s)	30, 370
LmnI	GCTCC	2 cut(s)	487, 523
Lsp1109I	GCAGC	4 cut(s)	95, 152, 278, 733
LweI	GCATC	2 cut(s)	262, 505
MaeI	CTAG	3 cut(s)	219, 674, 729
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	239, 329, 391
MalI	GATC	2 cut(s)	32, 372
MboI	GATC	2 cut(s)	30, 370
MboII	GAAGA	3 cut(s)	34, 163, 263
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	552
MnlI	CCTC	8 cut(s)	18, 21, 274, 301, 304, 349, 586, 790
MseI	TTAA	2 cut(s)	98, 456
MslI	CAYNNNNRTG	2 cut(s)	173, 252
MspA1I	CMGCKG	2 cut(s)	86, 269
MspI	CCGG	2 cut(s)	491, 775
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	2 cut(s)	470, 646
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	80, 83, 203, 272, 602, 674
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	30, 370
NlaIII	CATG	6 cut(s)	60, 70, 82, 206, 662, 797
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	329, 391
PaqCI	CACCTGC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	470, 646
PfeI	GAWTC	5 cut(s)	16, 503, 655, 691, 790
PkrI	GCNGC	6 cut(s)	76, 85, 167, 268, 598, 723
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PshAI	GACNNNNGTC	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	2 cut(s)	86, 269
RsaI	GTAC	2 cut(s)	438, 635
RsaNI	GTAC	2 cut(s)	437, 634
RseI	CAYNNNNRTG	2 cut(s)	173, 252
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	98, 456
SatI	GCNGC	6 cut(s)	75, 84, 166, 267, 597, 722
Sau3AI	GATC	2 cut(s)	30, 370
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	262, 505
SmiMI	CAYNNNNRTG	2 cut(s)	173, 252
SpeI	ACTAGT	1 cut(s)	728
SsiI	CCGC	2 cut(s)	75, 597
SspMI	CTAG	3 cut(s)	219, 674, 729
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	3 cut(s)	78, 522, 600
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	586
TauI	GCSGC	2 cut(s)	77, 599
TfiI	GAWTC	5 cut(s)	16, 503, 655, 691, 790
Tru1I	TTAA	2 cut(s)	98, 456
Tru9I	TTAA	2 cut(s)	98, 456
TscAI	CASTG	3 cut(s)	114, 400, 756
TseFI	GTSAC	2 cut(s)	329, 391
TseI	GCWGC	4 cut(s)	83, 165, 266, 721
Tsp45I	GTSAC	2 cut(s)	329, 391
TspDTI	ATGAA	4 cut(s)	55, 153, 523, 647
TspRI	CASTG	3 cut(s)	114, 400, 756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XmiI	GTMKAC	2 cut(s)	129, 451
XspI	CTAG	3 cut(s)	219, 674, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.