Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

63783939 .. 63785057

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTCTCCAAGCAACCGAGAAAGTGAATGTAGGAGTGATTCTTGATGACCTTCATTCTCAAACTGAGAATATTTGGTTGTGCTGCATCGAAATGGCCCTCAAGGACTTTTATGCTTCTCATGCTCACTACAGAACGGGGCTGGTTTTGAACATTAGGGACTGCAAAAAGGAGATCGTTGGTGCAGCTGCTGCAGCTCTAGATCTGATTAAGAATGAACAAGTGCAAGCCATCATGGGGCCAGTGACATCAATGGAGACGAGCTTTGTCATTAATCTTGGAAAGCAAGCTTTTGTCCCCATTATCTCATTTTCTGCCACAAGCTCTTCTCGTACTTCCGTCCGCAGCCCTTACTTTTTCCAATTTGCACAGAATGACTCATCCCAATTAAGTGAAAGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

134

Amino Acids

14.76

Weight (kDa)

5.73

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	27 - 129	2.8e-18	Receptor family ligand binding region
Peripla_BP_6	PF13458	28 - 130	2.9e-09	Periplasmic binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	5 cut(s)	188, 197, 264, 290, 324
AluI	AGCT	5 cut(s)	188, 197, 264, 290, 324
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	96, 239
ApeKI	GCWGC	6 cut(s)	84, 185, 188, 191, 194, 345
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	97, 239
BbvI	GCAGC	6 cut(s)	71, 175, 178, 197, 206, 357
BccI	CCATC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	130, 192
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	85, 186, 189, 192, 195, 346
BlsI	GCNGC	6 cut(s)	86, 187, 190, 193, 196, 347
BmgT120I	GGNCC	2 cut(s)	97, 239
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	6 cut(s)	71, 175, 178, 197, 206, 357
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	98, 241
BslFI	GGGAC	2 cut(s)	173, 281
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	173, 281
BsnI	GGCC	2 cut(s)	98, 241
Bsp143I	GATC	2 cut(s)	174, 202
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	98, 241
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	174, 202
Bst6I	CTCTTC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	228, 288
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	2 cut(s)	177, 205
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	174, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 122, 191, 194
BstSFI	CTRYAG	2 cut(s)	130, 192
BstV1I	GCAGC	6 cut(s)	71, 175, 178, 197, 206, 357
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	98, 241
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	228, 288
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	97, 239
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	122, 235
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	176, 204
DpnII	GATC	2 cut(s)	174, 202
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	2 cut(s)	125, 238
FaiI	YATR	3 cut(s)	114, 123, 236
FaqI	GGGAC	2 cut(s)	173, 281
FatI	CATG	2 cut(s)	121, 234
Fnu4HI	GCNGC	6 cut(s)	85, 186, 189, 192, 195, 346
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	6 cut(s)	85, 186, 189, 192, 195, 346
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	6 cut(s)	85, 186, 189, 192, 195, 346
HaeIII	GGCC	2 cut(s)	98, 241
Hin1II	CATG	2 cut(s)	125, 238
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	40, 377
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	44, 200
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	6 cut(s)	87, 165, 185, 194, 226, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 122, 191, 194
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	125, 238
Kzo9I	GATC	2 cut(s)	174, 202
LguI	GCTCTTC	1 cut(s)	331
LpnPI	CCDG	2 cut(s)	128, 255
Lsp1109I	GCAGC	6 cut(s)	71, 175, 178, 197, 206, 357
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	176, 204
MboI	GATC	2 cut(s)	174, 202
MboII	GAAGA	1 cut(s)	318
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	362, 386
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	210, 273, 389
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	11, 122, 191, 194
NdeII	GATC	2 cut(s)	174, 202
NlaIII	CATG	2 cut(s)	125, 238
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	6 cut(s)	86, 187, 190, 193, 196, 347
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	97, 239
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	210, 273, 389
SatI	GCNGC	6 cut(s)	85, 186, 189, 192, 195, 346
Sau3AI	GATC	2 cut(s)	174, 202
Sau96I	GGNCC	2 cut(s)	97, 239
SchI	GAGTC	1 cut(s)	371
SetI	ASST	6 cut(s)	54, 190, 199, 266, 292, 326
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	130, 192
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	362, 386
SsiI	CCGC	1 cut(s)	343
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	200
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	362, 386
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	210, 273, 389
Tru9I	TTAA	3 cut(s)	210, 273, 389
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	6 cut(s)	84, 185, 188, 191, 194, 345
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	44, 231
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	249
VspI	ATTAAT	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	199
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.