Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

27294641 .. 27313226

Gene Structure 18586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG169700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCTTGAGTGCACAGAACACAACTATTCGAGTGAATGTGGGTGTAATTCTTGACTTTGATTCAGGGAGTGGAAAAAGTGGGAACGTTTATTGGAGTTGTATGAAGCTGGCCCTCTCAGACTTCTATGCATCCAATCCTCACTACAGGACTAGGTTGGTTTTGCTCCCAAGAAACTCCAAAGGAACTGTTGTTGGTGCAGCCGCAGCAGGTTCTCTCTCCTTACCTGACTTTCAACCTTATATGCTCATGAAAATAACCAAAAACAAAATGAAACCCGGAGCCGGCGAGATTAGTAGAGAAGGAGAGAGGGACGCACGGTTGGTATCGTGCCCTATCACGACGTCGTTTGATAGCTCAAGACCCACCGCCGATGCAGAAGGAGATAGGGTCGCACGGTTCTACAAGATCCGATTCGGATCCTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

9.69

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	200
AciI	CCGC	2 cut(s)	204, 369
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	3 cut(s)	403, 414, 427
AcyI	GRCGYC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	2 cut(s)	109, 357
AluI	AGCT	2 cut(s)	109, 357
Alw21I	GWGCWC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	403, 414, 427
AoxI	GGCC	2 cut(s)	3, 111
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	200, 206
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	279
BaeGI	GKGCMC	2 cut(s)	16, 335
BamHI	GGATCC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	212, 218
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	201, 204, 207
BlsI	GCNGC	3 cut(s)	202, 205, 208
Bme1390I	CCNGG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	283, 421
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	140, 364
BpuEI	CTTGAG	2 cut(s)	28, 343
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	418
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	132
BseSI	GKGCMC	2 cut(s)	16, 335
BseXI	GCAGC	2 cut(s)	212, 218
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	5, 113
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	279, 285
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	5, 113
Bsp1286I	GDGCHC	2 cut(s)	16, 335
Bsp143I	GATC	2 cut(s)	408, 419
BspACI	CCGC	2 cut(s)	204, 369
BspANI	GGCC	2 cut(s)	5, 113
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	283, 421
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	3 cut(s)	403, 414, 427
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	2 cut(s)	408, 419
BssNI	GRCGYC	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	190, 321, 399
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	111, 286
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	411, 422
BstMBI	GATC	2 cut(s)	408, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 206
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	16, 335
BstV1I	GCAGC	2 cut(s)	212, 218
BstX2I	RGATCY	2 cut(s)	408, 419
BstYI	RGATCY	2 cut(s)	408, 419
BsuRI	GGCC	2 cut(s)	5, 113
BtsCI	GGATG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	111, 286
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	6 cut(s)	5, 109, 113, 203, 284, 357
CviKI_1	RGCY	6 cut(s)	5, 109, 113, 203, 284, 357
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	410, 421
DpnII	GATC	2 cut(s)	408, 419
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	1 cut(s)	253
FaiI	YATR	5 cut(s)	104, 129, 243, 245, 251
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	201, 204, 207
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	201, 204, 207
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	3 cut(s)	201, 204, 207
HaeIII	GGCC	2 cut(s)	5, 113
HapII	CCGG	2 cut(s)	279, 285
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	2 cut(s)	62, 414
HpaII	CCGG	2 cut(s)	279, 285
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	121, 413, 419
Hpy188III	TCNNGA	4 cut(s)	53, 250, 340, 360
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	2 cut(s)	346, 349
HpyAV	CCTTC	2 cut(s)	296, 374
HpyCH4III	ACNGT	3 cut(s)	190, 321, 399
HpyCH4IV	ACGT	2 cut(s)	87, 344
HpyCH4V	TGCA	4 cut(s)	14, 131, 200, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 206
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	87, 344
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	253
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	408, 419
LmnI	GCTCC	2 cut(s)	171, 281
LpnPI	CCDG	7 cut(s)	51, 95, 133, 195, 240, 292, 298
Lsp1109I	GCAGC	2 cut(s)	212, 218
LweI	GCATC	2 cut(s)	140, 364
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	87, 344
MalI	GATC	2 cut(s)	410, 421
MboI	GATC	2 cut(s)	408, 419
MflI	RGATCY	2 cut(s)	408, 419
MhlI	GDGCHC	2 cut(s)	16, 335
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	3 cut(s)	125, 150, 303
Mph1103I	ATGCAT	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	284
MspI	CCGG	2 cut(s)	279, 285
MspR9I	CCNGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	11, 206
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	408, 419
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	283, 421
NsiI	ATGCAT	1 cut(s)	133
PagI	TCATGA	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	62, 414
PkrI	GCNGC	3 cut(s)	202, 205, 208
Psp1406I	AACGTT	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	283, 421
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	408, 419
SatI	GCNGC	3 cut(s)	201, 204, 207
Sau3AI	GATC	2 cut(s)	408, 419
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	16, 335
SetI	ASST	8 cut(s)	90, 111, 158, 214, 229, 241, 347, 359
SfaNI	GCATC	2 cut(s)	140, 364
SfcI	CTRYAG	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	7, 358
SmoI	CTYRAG	2 cut(s)	7, 358
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	204, 369
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	190, 321, 399
TaiI	ACGT	2 cut(s)	90, 347
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	48
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	62, 414
TseI	GCWGC	2 cut(s)	200, 206
TspDTI	ATGAA	3 cut(s)	119, 266, 287
VneI	GTGCAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.