Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

27313208 .. 27313414

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGGAAATGGCCCTCTCAGATATTTATGCGTCTCATCCTTACTTCAAGACAAGGATAGTATTGAACACAAGGAACTCCAAACAAACTGTTGTTGGTGCAGCTGCGGCAGTATACTTTCTCTTTGATTTCATATCAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

47

Amino Acids

5.32

Weight (kDa)

8.16

Isoelectric Point (pI)

13.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	46, 64
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	98, 101
AspS9I	GGNCC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	88, 110
BcoDI	GTCTC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	99, 102, 105
BlsI	GCNGC	3 cut(s)	100, 103, 106
BmgT120I	GGNCC	1 cut(s)	10
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	88, 110
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	29
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	88, 110
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	18
CviJI	RGCY	2 cut(s)	11, 101
CviKI_1	RGCY	2 cut(s)	11, 101
DdeI	CTNAG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	36
FaiI	YATR	3 cut(s)	27, 112, 131
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	99, 102, 105
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	99, 102, 105
FspEI	CC	8 cut(s)	25, 26, 37, 51, 55, 78, 89, 91
GluI	GCNGC	3 cut(s)	99, 102, 105
HaeIII	GGCC	1 cut(s)	11
HgaI	GACGC	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	88, 110
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	100, 103, 106
PspPI	GGNCC	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	142
SatI	GCNGC	3 cut(s)	99, 102, 105
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	1 cut(s)	103
SgeI	CNNG	3 cut(s)	58, 63, 81
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	142
Tru9I	TTAA	1 cut(s)	142
TseI	GCWGC	2 cut(s)	98, 101
TspDTI	ATGAA	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.