Rh6AG497100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000721
Physical Location & Seq
Reverse (-)
67324276 .. 67327656
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG497100.1

Sequence Viewer

Length: 237 bp
ATGCCATTTATCCTTACTAAAATACTAGGATGGTTCTACACACGAGACTCCCGAAAAGAAATTGTTGTTGCAGCTGGTGCAGGTGCTGTTGAATCCCCACGCAACATCAGCAGTCATGAGAGCACATCATGCGATTCCAATGACAGAGAGTCACAAATTGTCCTTACTGACACTCAGCATGGTGATTTGATCCCAATAGTCAAGCAACCCAAGAGGTTGAATATGCAATCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

6.71

Isoelectric Point (pI)

72.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 184
AgsI TTSAA 2 cut(s) 92, 220
AhdI GACNNNNNGTC 1 cut(s) 148
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 194
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeRI GACNNNNNGTC 1 cut(s) 148
BseGI GGATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 184
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 42
Bst2BI CACGAG 1 cut(s) 42
BstAPI GCANNNNNTGC 2 cut(s) 77, 129
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 77, 108, 129
BstV1I GCAGC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 115
CviAII CATG 3 cut(s) 116, 129, 179
CviJI RGCY 1 cut(s) 74
CviKI_1 RGCY 1 cut(s) 74
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 148
Eam1105I GACNNNNNGTC 1 cut(s) 148
FaeI CATG 3 cut(s) 119, 132, 182
FaiI YATR 4 cut(s) 117, 130, 180, 224
FatI CATG 3 cut(s) 115, 128, 178
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 119, 132, 182
HinfI GANTC 4 cut(s) 47, 92, 134, 149
HphI GGTGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 51, 116
HpyCH4V TGCA 3 cut(s) 71, 80, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 108, 129
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 3 cut(s) 119, 132, 182
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 60, 66
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 60, 156
MlyI GAGTC 2 cut(s) 41, 158
MnlI CCTC 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 77, 108, 129
NdeII GATC 1 cut(s) 189
NlaIII CATG 3 cut(s) 119, 132, 182
NmuCI GTSAC 1 cut(s) 150
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PfeI GAWTC 2 cut(s) 92, 134
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 41, 157
PpsI GAGTC 2 cut(s) 41, 157
PstNI CAGNNNCTG 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 41, 158
SduI GDGCHC 1 cut(s) 125
SetI ASST 3 cut(s) 76, 85, 218
Sse9I AATT 2 cut(s) 60, 156
SspMI CTAG 1 cut(s) 26
TaqI TCGA 1 cut(s) 230
TasI AATT 2 cut(s) 60, 156
TfiI GAWTC 2 cut(s) 92, 134
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 150
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.