Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

63282299 .. 63316435

Gene Structure 34137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGAAGATGAAGCTGATCAAGAATATTCATATCATCTCTCTTTCTTATTCTCTCTTTTTAGTCTTCTCTAGTATTTTCGCGGCCGTGGCGGCACAGAATAATCCGGTGAATGTGGGAGTCGGGGTGGTTCTTGATTTCGATACGGGGTTTGGGAAGATGGGGCTGAGCTGCATCAACATGTCTCTCTCTGACTTCTATGCCTCTCATCCCAATTACACCACCAGGCTGCTTCTGCACCAGAGGAACTCACCCACAGACGTTGTTCTTACAGCTGCTGCAGCCCTGGCACAATCTGAAACCATTATCCCAGTGAATGTGGGGGTTGTTCTCGATGACCTTAAGTATTCATTGACCAAGGATATTTGGTTGCGTTGCATGAAAATGGCTCTCGCAGACTTCTATGCTACTCATGCTCACTACAACAGAGAAAGTGCTGGGCACTGCAGAGAAAGTGTCGTCAGTGCAGCTGCTGCAGGTGTTGGTTGTTTGACGTCGTTTCAAACCTGGAAGACTCAGATCTACAAAAGCCCCCAACTTCCCAGGTTCGATATCGCCGGATACGCGACATGCGTCACCGTCCCCTTTACTTTGAAGGCCTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

202

Amino Acids

22.13

Weight (kDa)

8.98

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
AatII	GACGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	467
AccII	CGCG	2 cut(s)	83, 566
AciI	CCGC	2 cut(s)	83, 92
AcoI	YGGCCR	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	494
AflII	CTTAAG	2 cut(s)	341, 601
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	503, 595
AjnI	CCWGG	4 cut(s)	224, 285, 506, 542
AluBI	AGCT	4 cut(s)	16, 171, 275, 470
AluI	AGCT	4 cut(s)	16, 171, 275, 470
Alw26I	GTCTC	1 cut(s)	189
AlwNI	CAGNNNCTG	2 cut(s)	278, 473
AoxI	GGCC	2 cut(s)	84, 597
ApeKI	GCWGC	8 cut(s)	171, 229, 275, 278, 281, 467, 470, 473
AsuHPI	GGTGA	3 cut(s)	121, 243, 568
BaeGI	GKGCMC	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	58, 518
BbvI	GCAGC	8 cut(s)	158, 216, 262, 265, 293, 457, 460, 479
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	4 cut(s)	226, 287, 508, 544
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	3 cut(s)	279, 445, 474
BfrI	CTTAAG	2 cut(s)	341, 601
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	519
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	4 cut(s)	226, 287, 508, 544
BmrFI	CCNGG	4 cut(s)	226, 287, 508, 544
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	572
BpiI	GAAGAC	2 cut(s)	58, 518
Bpu1102I	GCTNAGC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	87, 285, 357, 542
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	4 cut(s)	226, 287, 508, 544
BseDI	CCNNGG	4 cut(s)	87, 285, 357, 542
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	158, 530
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	444
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	8 cut(s)	158, 216, 262, 265, 293, 457, 460, 479
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	2 cut(s)	221, 486
Bsh1236I	CGCG	2 cut(s)	83, 566
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	86, 599
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	107, 558
BslFI	GGGAC	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	86, 599
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	18, 519
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	83, 92
BspANI	GGCC	2 cut(s)	86, 599
BspCNI	CTCAG	2 cut(s)	159, 529
BspFNI	CGCG	2 cut(s)	83, 566
BspMAI	CTGCAG	3 cut(s)	283, 449, 478
BspMI	ACCTGC	1 cut(s)	467
BspTI	CTTAAG	2 cut(s)	341, 601
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	87, 285, 357, 542
BssMI	GATC	2 cut(s)	18, 519
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	4 cut(s)	226, 287, 508, 544
Bst4CI	ACNGT	1 cut(s)	580
BstACI	GRCGYC	1 cut(s)	494
BstAFI	CTTAAG	2 cut(s)	341, 601
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	167, 516
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	83, 566
BstKTI	GATC	2 cut(s)	21, 522
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	18, 519
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 92, 235, 281, 287, 413, 473, 563
BstNI	CCWGG	4 cut(s)	226, 287, 508, 544
BstNSI	RCATGY	2 cut(s)	184, 573
BstPAI	GACNNNNGTC	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	224, 285, 506, 542
BstSFI	CTRYAG	3 cut(s)	279, 445, 474
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	2 cut(s)	83, 566
BstV1I	GCAGC	8 cut(s)	158, 216, 262, 265, 293, 457, 460, 479
BstV2I	GAAGAC	2 cut(s)	58, 518
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BstZI	CGGCCG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	86, 599
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	318, 442, 469
BveI	ACCTGC	1 cut(s)	467
CaiI	CAGNNNCTG	2 cut(s)	278, 473
CseI	GACGC	1 cut(s)	562
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	4 cut(s)	181, 379, 413, 570
DdeI	CTNAG	2 cut(s)	167, 516
DpnI	GATC	2 cut(s)	20, 521
DpnII	GATC	2 cut(s)	18, 519
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	599
Eco32I	GATATC	1 cut(s)	553
Eco52I	CGGCCG	1 cut(s)	84
EcoRII	CCWGG	4 cut(s)	224, 285, 506, 542
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	184, 382, 416, 573
FaiI	YATR	7 cut(s)	33, 182, 201, 380, 405, 414, 571
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	180, 378, 412, 569
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	195
FspBI	CTAG	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	86, 599
HapII	CCGG	2 cut(s)	107, 558
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	184, 382, 416, 573
HinfI	GANTC	2 cut(s)	120, 514
HpaII	CCGG	2 cut(s)	107, 558
HphI	GGTGA	3 cut(s)	121, 243, 568
Hpy188I	TCNGA	3 cut(s)	193, 298, 519
Hpy188III	TCNNGA	3 cut(s)	22, 134, 332
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	2 cut(s)	261, 494
HpyCH4V	TGCA	7 cut(s)	174, 238, 281, 378, 447, 467, 476
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 92, 235, 281, 287, 413, 473, 563
HpyF3I	CTNAG	2 cut(s)	167, 516
HpySE526I	ACGT	2 cut(s)	261, 494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	184, 382, 416, 573
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 519
Lsp1109I	GCAGC	8 cut(s)	158, 216, 262, 265, 293, 457, 460, 479
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	261, 494
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	2 cut(s)	20, 521
MboI	GATC	2 cut(s)	18, 519
MboII	GAAGA	4 cut(s)	19, 58, 169, 523
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	129, 508
MnlI	CCTC	2 cut(s)	214, 237
MseI	TTAA	2 cut(s)	342, 602
MslI	CAYNNNNRTG	2 cut(s)	179, 383
MspA1I	CMGCKG	2 cut(s)	275, 470
MspCI	CTTAAG	2 cut(s)	341, 601
MspI	CCGG	2 cut(s)	107, 558
MspR9I	CCNGG	4 cut(s)	226, 287, 508, 544
MvaI	CCWGG	4 cut(s)	226, 287, 508, 544
MvnI	CGCG	2 cut(s)	83, 566
MwoI	GCNNNNNNNGC	8 cut(s)	89, 92, 235, 281, 287, 413, 473, 563
NdeII	GATC	2 cut(s)	18, 519
NlaIII	CATG	4 cut(s)	184, 382, 416, 573
NmuCI	GTSAC	1 cut(s)	574
NspI	RCATGY	2 cut(s)	184, 573
PaqCI	CACCTGC	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	599
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PleI	GAGTC	2 cut(s)	128, 508
PpsI	GAGTC	2 cut(s)	128, 508
PscI	ACATGT	1 cut(s)	180
PshAI	GACNNNNGTC	1 cut(s)	572
Psp6I	CCWGG	4 cut(s)	224, 285, 506, 542
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	4 cut(s)	224, 285, 506, 542
PstI	CTGCAG	3 cut(s)	283, 449, 478
PstNI	CAGNNNCTG	2 cut(s)	278, 473
PsuI	RGATCY	1 cut(s)	519
PvuII	CAGCTG	2 cut(s)	275, 470
RseI	CAYNNNNRTG	2 cut(s)	179, 383
SaqAI	TTAA	2 cut(s)	342, 602
Sau3AI	GATC	2 cut(s)	18, 519
SchI	GAGTC	2 cut(s)	129, 508
ScrFI	CCNGG	4 cut(s)	226, 287, 508, 544
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	3 cut(s)	279, 445, 474
SmiMI	CAYNNNNRTG	2 cut(s)	179, 383
SmlI	CTYRAG	2 cut(s)	341, 601
SmoI	CTYRAG	2 cut(s)	341, 601
Sse9I	AATT	1 cut(s)	214
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	2 cut(s)	83, 92
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	4 cut(s)	224, 285, 506, 542
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	2 cut(s)	264, 497
TaqI	TCGA	3 cut(s)	141, 333, 549
TasI	AATT	1 cut(s)	214
TauI	GCSGC	2 cut(s)	86, 95
Tru1I	TTAA	2 cut(s)	342, 602
Tru9I	TTAA	2 cut(s)	342, 602
TscAI	CASTG	3 cut(s)	318, 449, 469
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	8 cut(s)	171, 229, 275, 278, 281, 467, 470, 473
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	5 cut(s)	20, 20, 26, 339, 395
TspRI	CASTG	3 cut(s)	318, 449, 469
Vha464I	CTTAAG	2 cut(s)	341, 601
XceI	RCATGY	2 cut(s)	184, 573
XspI	CTAG	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.