Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

34255684 .. 34272582

Gene Structure 16899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG272900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGCTCTATGGATCATAAGAAGAGAACTATCCTTCTTCTTTTCTCATGGATTTTCATGGTCGCCACCATGGCAGCTGCAAGCACAACGATAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGAACCGAGTGGGAAAATGTACTTGAGTTGCATCGAAATGGCGCTTTCGGATTTCTATGCTATCCATGCTGACTACAAGACTAGGCTCGTTTTGAACACCAGGAACTCCAATGGAGATGTGGTTGGAGCAGCTGCCGCAGGGGCGGCAGCTCTCGCGCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

97

Amino Acids

10.35

Weight (kDa)

6.01

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	284
AciI	CCGC	2 cut(s)	264, 272
AclWI	GGATC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	6, 77, 260, 278
AluI	AGCT	4 cut(s)	6, 77, 260, 278
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	21
ApeKI	GCWGC	5 cut(s)	74, 77, 257, 260, 275
AspLEI	GCGC	2 cut(s)	172, 286
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	64, 86, 247, 269, 287
BciT130I	CCWGG	1 cut(s)	229
BfaI	CTAG	2 cut(s)	210, 292
BfoI	RGCGCY	1 cut(s)	173
BglI	GCCNNNNNGGC	2 cut(s)	71, 269
BisI	GCNGC	7 cut(s)	75, 78, 258, 261, 264, 273, 276
BlsI	GCNGC	7 cut(s)	76, 79, 259, 262, 265, 274, 277
Bme1390I	CCNGG	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 234, 264
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	64, 86, 247, 269, 287
Bsh1236I	CGCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	264, 272
BspFNI	CGCG	1 cut(s)	284
BspPI	GGATC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	172, 286
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 194, 263, 269, 272, 281
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	5 cut(s)	64, 86, 247, 269, 287
BtgI	CCRYGG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	2 cut(s)	172, 286
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	48, 58, 70, 194
CviJI	RGCY	5 cut(s)	6, 77, 214, 260, 278
CviKI_1	RGCY	5 cut(s)	6, 77, 214, 260, 278
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	51, 61, 73, 197
FaiI	YATR	7 cut(s)	11, 18, 49, 59, 71, 186, 195
FatI	CATG	4 cut(s)	47, 57, 69, 193
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	75, 78, 258, 261, 264, 273, 276
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	75, 78, 258, 261, 264, 273, 276
FspBI	CTAG	2 cut(s)	210, 292
GlaI	GCGC	2 cut(s)	171, 285
GluI	GCNGC	7 cut(s)	75, 78, 258, 261, 264, 273, 276
HaeII	RGCGCY	1 cut(s)	173
HhaI	GCGC	2 cut(s)	172, 286
Hin1II	CATG	4 cut(s)	51, 61, 73, 197
Hin6I	GCGC	2 cut(s)	170, 284
HinP1I	GCGC	2 cut(s)	170, 284
Hpy166II	GTNNAC	2 cut(s)	103, 121
Hpy188I	TCNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	103, 121
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	80, 159
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 194, 263, 269, 272, 281
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	51, 61, 73, 197
HspAI	GCGC	2 cut(s)	170, 284
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	111, 214, 241, 252
Lsp1109I	GCAGC	5 cut(s)	64, 86, 247, 269, 287
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	210, 292
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	29, 34
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	77, 260
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	6 cut(s)	71, 194, 263, 269, 272, 281
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	51, 61, 73, 197
PkrI	GCNGC	7 cut(s)	76, 79, 259, 262, 265, 274, 277
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PvuII	CAGCTG	2 cut(s)	77, 260
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	7 cut(s)	75, 78, 258, 261, 264, 273, 276
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 79, 108, 126, 262, 280
SfaNI	GCATC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SsiI	CCGC	2 cut(s)	264, 272
SspMI	CTAG	2 cut(s)	210, 292
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	266, 275
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	5 cut(s)	74, 77, 257, 260, 275
TspDTI	ATGAA	2 cut(s)	46, 144
TspRI	CASTG	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	210, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.