RchiOBHm_Chr6g0261121

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
16055183 .. 16055997
815 bp
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UTR
Exon/CDS
Intron
PRQ23418

Sequence Viewer

Length: 360 bp
ATGGGGACGGGGACGGGGAATCCCCAGTATCTTATTACGGGGATTGGGGAGGGTACGGGGATGGAGAATGAAGTCGGGTATGGGGATGGTAATTTAATCCCCTTACCCTACCCTCCCCATTGCCATCCCTATTTGGCCCAAAGGATTGGCAGGACCTCCTTTCATTATCTTATTGTCTGCGATAAGGCAGCGGCCTTTGAAATCTTCAGTAATGGGATATATAAACTACGGATTTGGTTTCAAAATTCATGGACTTGTGAGACTGCAGTATTGCAGATAGGCTTACATCCAATTATGATGAAGTCGATTGAAGTGCTTTGCAGTATACTGCAGATGGGCTTACACACTTCCCATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

6.26

Isoelectric Point (pI)

20.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AciI CCGC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 190
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 3 cut(s) 200, 242, 311
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 2 cut(s) 135, 192
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 136, 153
AvaII GGWCC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 200
BccI CCATC 4 cut(s) 55, 80, 132, 328
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 264, 329
BisI GCNGC 2 cut(s) 189, 192
BlsI GCNGC 2 cut(s) 190, 193
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 136, 153
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 118
BseGI GGATG 4 cut(s) 66, 91, 124, 286
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 137, 194
BslFI GGGAC 2 cut(s) 19, 25
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 19, 25
BsnI GGCC 2 cut(s) 137, 194
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 137, 194
BspMAI CTGCAG 2 cut(s) 268, 333
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 25
BssNAI GTATAC 1 cut(s) 326
Bst1107I GTATAC 1 cut(s) 326
BstF5I GGATG 4 cut(s) 66, 91, 124, 286
BstMAI GTCTC 1 cut(s) 254
BstSFI CTRYAG 2 cut(s) 264, 329
BstV1I GCAGC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 146
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 137, 194
BtsCI GGATG 4 cut(s) 66, 91, 124, 286
Cfr13I GGNCC 2 cut(s) 136, 153
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 249
CviJI RGCY 4 cut(s) 137, 194, 282, 339
CviKI_1 RGCY 4 cut(s) 137, 194, 282, 339
CviQI GTAC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 1 cut(s) 252
FaiI YATR 7 cut(s) 81, 220, 222, 250, 296, 326, 358
FaqI GGGAC 2 cut(s) 19, 25
FatI CATG 1 cut(s) 248
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 189, 192
FokI GGATG 4 cut(s) 73, 98, 111, 273
Fsp4HI GCNGC 2 cut(s) 189, 192
GluI GCNGC 2 cut(s) 189, 192
HaeIII GGCC 2 cut(s) 137, 194
Hin1II CATG 1 cut(s) 252
HinfI GANTC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 326
HpyCH4V TGCA 4 cut(s) 266, 274, 321, 331
Hsp92II CATG 1 cut(s) 252
LpnPI CCDG 2 cut(s) 38, 136
Lsp1109I GCAGC 1 cut(s) 200
MboII GAAGA 1 cut(s) 196
MluCI AATT 3 cut(s) 91, 244, 291
MnlI CCTC 3 cut(s) 43, 123, 166
MseI TTAA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 191
NlaIII CATG 1 cut(s) 252
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 190, 193
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspPI GGNCC 2 cut(s) 136, 153
PspPPI RGGWCCY 1 cut(s) 153
PstI CTGCAG 2 cut(s) 268, 333
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 189, 192
Sau96I GGNCC 2 cut(s) 136, 153
SetI ASST 1 cut(s) 158
SfcI CTRYAG 2 cut(s) 264, 329
SgeI CNNG 9 cut(s) 21, 27, 37, 51, 69, 88, 163, 261, 267
SinI GGWCC 1 cut(s) 153
Sse9I AATT 3 cut(s) 91, 244, 291
SsiI CCGC 1 cut(s) 191
TaqI TCGA 1 cut(s) 305
TasI AATT 3 cut(s) 91, 244, 291
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 84, 152, 237, 314
TspGWI ACGGA 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.