Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

34545631 .. 34545951

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGCTCTATGGAGAATCATAAGAGAAGTATCCTTCTTCTTTTCTCATGGATTTTCATGGTCGCCGCCATGGCAGCTGCAAGCAGAACGATAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGAACCGAAAGGGAAAATGTATTTGAGTTGCATCGAAATGGCGCTCTCGGATTTCTATGCTATCCATGCTGACTACAAGACTAGGCTCGTTTTGAACACCAGGAACTCCAATGGAGGTGTGGTTGGAGCAGCTGCCGCAGGTTTCTCTCTCTACCTTTTTTTTTTTTTTTTGAACAATTCTCTTGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

7.9

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	66, 264
AgsI	TTSAA	2 cut(s)	223, 301
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	6, 77, 260
AluI	AGCT	3 cut(s)	6, 77, 260
Alw21I	GWGCWC	1 cut(s)	8
ApeKI	GCWGC	4 cut(s)	74, 77, 257, 260
AspLEI	GCGC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	64, 86, 247, 269
BciT130I	CCWGG	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	66, 75, 78, 258, 261, 264
BlsI	GCNGC	6 cut(s)	67, 76, 79, 259, 262, 265
Bme1390I	CCNGG	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 234, 264
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	64, 86, 247, 269
BsiHKAI	GWGCWC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	66, 264
BspMI	ACCTGC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 74, 194, 263
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	64, 86, 247, 269
BsuI	GTATCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	4 cut(s)	48, 58, 70, 194
CviJI	RGCY	4 cut(s)	6, 77, 214, 260
CviKI_1	RGCY	4 cut(s)	6, 77, 214, 260
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	51, 61, 73, 197
FaiI	YATR	9 cut(s)	11, 21, 49, 59, 71, 186, 195, 317, 319
FatI	CATG	4 cut(s)	47, 57, 69, 193
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	66, 75, 78, 258, 261, 264
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	66, 75, 78, 258, 261, 264
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	66, 75, 78, 258, 261, 264
HaeII	RGCGCY	1 cut(s)	173
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	51, 61, 73, 197
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	103, 121
Hpy188I	TCNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	103, 121
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	80, 159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 74, 194, 263
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	51, 61, 73, 197
HspAI	GCGC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	111, 214, 241, 252
Lsp1109I	GCAGC	4 cut(s)	64, 86, 247, 269
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	105
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	77, 260
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	71, 74, 194, 263
NcoI	CCATGG	1 cut(s)	69
NlaIII	CATG	4 cut(s)	51, 61, 73, 197
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	6 cut(s)	67, 76, 79, 259, 262, 265
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PvuII	CAGCTG	2 cut(s)	77, 260
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	6 cut(s)	66, 75, 78, 258, 261, 264
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 79, 108, 126, 247, 262, 271, 285
SfaNI	GCATC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	66, 264
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	304
TauI	GCSGC	2 cut(s)	68, 266
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	4 cut(s)	74, 77, 257, 260
TspDTI	ATGAA	2 cut(s)	46, 144
TspRI	CASTG	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.