Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009130.1

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

44589 .. 44948

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009130.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgatcaagaaccctaccagcgctgttgcttttctcattttccttttattgtccaggatttccttggctgtgtcacaaaacaaaacgatctcagttaatgtgggtgtgatccttgactttgattctttgtttgggaagattggactgagctgcgtcgacatggccctctccgacttctattcctcgcatgctcactataacacaaggctggtgctacacacaagggactccatgagagatgttgttgctgaagctgctgcaggttcacttcccacctcttttgaactttttcatgttttaatcttatgcctcgcttatttttgtctccgagttgactatctatatatagtttctggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

6.38

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	150, 254
AluI	AGCT	2 cut(s)	150, 254
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	103
Aor51HI	AGCGCT	1 cut(s)	22
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	150, 254, 257
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	137, 241, 244
BciT130I	CCWGG	1 cut(s)	55
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	151, 255, 258
BlsI	GCNGC	3 cut(s)	152, 256, 259
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	105, 137
BseXI	GCAGC	3 cut(s)	137, 241, 244
BshFI	GGCC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	3, 87, 108
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	104, 138
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	3, 87, 108
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	91, 146
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	6, 90, 111
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	3, 87, 108
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	137, 241, 244
BsuRI	GGCC	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	4 cut(s)	160, 188, 232, 293
CviJI	RGCY	5 cut(s)	68, 150, 164, 208, 254
CviKI_1	RGCY	5 cut(s)	68, 150, 164, 208, 254
DdeI	CTNAG	2 cut(s)	91, 146
DpnI	GATC	3 cut(s)	5, 89, 110
DpnII	GATC	3 cut(s)	3, 87, 108
Eco130I	CCWWGG	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	163, 191, 235, 296
FaiI	YATR	9 cut(s)	161, 189, 198, 233, 294, 307, 343, 345, 347
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	159, 187, 231, 292
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	151, 255, 258
Fsp4HI	GCNGC	3 cut(s)	151, 255, 258
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	151, 255, 258
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	163, 191, 235, 296
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	2 cut(s)	157, 334
HindII	GTYRAC	2 cut(s)	157, 334
HinfI	GANTC	2 cut(s)	122, 227
Hpy166II	GTNNAC	3 cut(s)	157, 266, 334
Hpy188I	TCNGA	2 cut(s)	172, 329
Hpy188III	TCNNGA	2 cut(s)	7, 354
Hpy8I	GTNNAC	3 cut(s)	157, 266, 334
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	91, 146
Hsp92II	CATG	4 cut(s)	163, 191, 235, 296
HspAI	GCGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 87, 108
LpnPI	CCDG	6 cut(s)	31, 40, 67, 194, 246, 339
Lsp1109I	GCAGC	3 cut(s)	137, 241, 244
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	5, 89, 110
MboI	GATC	3 cut(s)	3, 87, 108
MboII	GAAGA	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	176, 193, 286, 320
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	96, 299
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	3, 87, 108
NlaIII	CATG	4 cut(s)	163, 191, 235, 296
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	152, 256, 259
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	96, 299
SatI	GCNGC	3 cut(s)	151, 255, 258
Sau3AI	GATC	3 cut(s)	3, 87, 108
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	4 cut(s)	152, 256, 265, 278
SfcI	CTRYAG	1 cut(s)	258
SphI	GCATGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	96, 299
Tru9I	TTAA	2 cut(s)	96, 299
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	3 cut(s)	150, 254, 257
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	281
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.