Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

5757044 .. 5757696

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCCTCAAGGACTCTTATGCTTCTCATGCTCACTACAGAACGAGGCTGGTTTTGAACATTAGGGACTGCAAAAAGGAGATCGTTGGTGCAGCTGCCGCAGTGACATCAATGGAGGCGAGCTTTGTCATTAATCTTGGAAAGCAAGCTCATGCCCCCATTATCTCATTTTCTGCCACAAGCTCTTCTCTTACTTCAGTCCGCAGCCCCTACTTTTTCCAATTTGCACAGAATGACTCATCCCAAGTGAAAGCCATTAGTTCCATAGTAAAAGCTTTTGGGTGGAGACAAGTTGTGCCCATCTACATCGACAGTGAGTATGGAGAGGGATTCATGCCATATTTAACTGATGCCTTACAAGAGGCTGAGGCCTATATTCCCTACCGCAGTGTCATTTCCCCATATGCCACTGATGATCAAATTCAAAGTGAGCTTTACAAGTTAATGACAATGCAAAACAGTCTTCGTTCTCCACATGACACCCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

164

Amino Acids

18.15

Weight (kDa)

6.4

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	28 - 152	1.1e-29	Receptor family ligand binding region
Peripla_BP_6	PF13458	31 - 137	2.5e-06	Periplasmic binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	99, 202, 385
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	58, 425
AluBI	AGCT	6 cut(s)	95, 123, 149, 183, 275, 433
AluI	AGCT	6 cut(s)	95, 123, 149, 183, 275, 433
Alw26I	GTCTC	1 cut(s)	280
AoxI	GGCC	2 cut(s)	3, 369
ApeKI	GCWGC	3 cut(s)	92, 95, 204
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	82, 104, 216
BccI	CCATC	1 cut(s)	308
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	4 cut(s)	93, 96, 99, 205
BlsI	GCNGC	4 cut(s)	94, 97, 100, 206
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	366
BseGI	GGATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	82, 104, 216
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	5, 371
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	5, 371
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	81, 415
BspACI	CCGC	3 cut(s)	99, 202, 385
BspANI	GGCC	2 cut(s)	5, 371
BspCNI	CTCAG	1 cut(s)	358
BspQI	GCTCTTC	1 cut(s)	190
BssMI	GATC	2 cut(s)	81, 415
Bst4CI	ACNGT	2 cut(s)	314, 461
Bst6I	CTCTTC	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	121, 147
BstDEI	CTNAG	2 cut(s)	366, 489
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	84, 418
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	81, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 98
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	82, 104, 216
BstV2I	GAAGAC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	5, 371
BtsCI	GGATG	1 cut(s)	239
BtsI	GCAGTG	2 cut(s)	108, 394
BtsIMutI	CAGTG	4 cut(s)	108, 319, 394, 408
Cac8I	GCNNGC	2 cut(s)	121, 147
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	4 cut(s)	29, 152, 334, 476
DdeI	CTNAG	2 cut(s)	366, 489
DpnI	GATC	2 cut(s)	83, 417
DpnII	GATC	2 cut(s)	81, 415
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	180
FaeI	CATG	4 cut(s)	32, 155, 337, 479
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	28, 151, 333, 475
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	93, 96, 99, 205
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	93, 96, 99, 205
GluI	GCNGC	4 cut(s)	93, 96, 99, 205
HaeIII	GGCC	2 cut(s)	5, 371
Hin1II	CATG	4 cut(s)	32, 155, 337, 479
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	3 cut(s)	14, 236, 330
HpyCH4III	ACNGT	2 cut(s)	314, 461
HpyCH4V	TGCA	4 cut(s)	72, 92, 227, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 98
HpyF3I	CTNAG	2 cut(s)	366, 489
Hsp92II	CATG	4 cut(s)	32, 155, 337, 479
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	81, 415
LguI	GCTCTTC	1 cut(s)	190
LpnPI	CCDG	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	82, 104, 216
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	83, 417
MboI	GATC	2 cut(s)	81, 415
MboII	GAAGA	2 cut(s)	177, 455
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	221, 420
MlyI	GAGTC	2 cut(s)	8, 230
MnlI	CCTC	6 cut(s)	17, 39, 109, 319, 355, 361
MseI	TTAA	3 cut(s)	132, 344, 443
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	29, 98
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	81, 415
NlaIII	CATG	4 cut(s)	32, 155, 337, 479
NmuCI	GTSAC	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	4 cut(s)	94, 97, 100, 206
PleI	GAGTC	2 cut(s)	8, 230
PpsI	GAGTC	2 cut(s)	8, 230
PshBI	ATTAAT	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	132, 344, 443
SatI	GCNGC	4 cut(s)	93, 96, 99, 205
Sau3AI	GATC	2 cut(s)	81, 415
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	8, 230
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	6 cut(s)	97, 125, 151, 185, 277, 435
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	221, 420
SseBI	AGGCCT	1 cut(s)	371
SsiI	CCGC	3 cut(s)	99, 202, 385
StuI	AGGCCT	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	314, 461
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	221, 420
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	3 cut(s)	132, 344, 443
Tru9I	TTAA	3 cut(s)	132, 344, 443
TscAI	CASTG	4 cut(s)	108, 319, 394, 415
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	92, 95, 204
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	322
TspRI	CASTG	4 cut(s)	108, 319, 394, 415
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.