Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

43939027 .. 43945580

Gene Structure 6554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGGGGAAATTATAATCAACTCTTTGTTAATGATCTTGGACGAGAACTTCTATGCATCCAATCCTCACTACAAGACTAGGTTGGGTTTGCTCCCAAGAAACTCCAAAGGAACTGTTGTTGGTGCAGCTGCAGCAGGTTCTCTCTCCTTATCTGACTTTCAACCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

56

Amino Acids

5.98

Weight (kDa)

6.52

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
ApeKI	GCWGC	3 cut(s)	125, 128, 131
BbvI	GCAGC	3 cut(s)	115, 137, 143
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	126, 129, 132
BlsI	GCNGC	3 cut(s)	127, 130, 133
BmsI	GCATC	1 cut(s)	65
BseGI	GGATG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	115, 137, 143
BsgI	GTGCAG	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	125
BssMI	GATC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	115, 137, 143
BtsCI	GGATG	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	125
CviJI	RGCY	1 cut(s)	128
CviKI_1	RGCY	1 cut(s)	128
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	58
FaiI	YATR	2 cut(s)	14, 54
Fnu4HI	GCNGC	3 cut(s)	126, 129, 132
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	126, 129, 132
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	3 cut(s)	126, 129, 132
Hpy188I	TCNGA	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	56, 125, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	1 cut(s)	120
Lsp1109I	GCAGC	3 cut(s)	115, 137, 143
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	78
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MluCI	AATT	1 cut(s)	9
MnlI	CCTC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	127, 130, 133
PsiI	TTATAA	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	126, 129, 132
Sau3AI	GATC	1 cut(s)	33
SetI	ASST	3 cut(s)	83, 130, 139
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	129
SgeI	CNNG	6 cut(s)	49, 55, 85, 90, 108, 147
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseI	GCWGC	3 cut(s)	125, 128, 131
XspI	CTAG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.