Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

35642754 .. 35654347

Gene Structure 11594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCTCGATGGAGAATCAGAAGAGGAGGATCAGTATCATCCTTGTTCTTCTTTCATGGATTTTCATGGCGGCCGCCATGGCAGCTGAAAACGCATCAACAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGAACCGAGTGGGAAGATGTATTTGAGTTGCATAGAAATGGCGCTCTCAGACTTCTATGCTTCCCATGCTCAATACGAGACTAGGGTCGTTTTGAACACCAGTCACTCCCACGAAGATGTCGTTGGTGCAGCTGACGCAGGATGGGATGCACATGAGGTCAAAGGTTCTTCTATAAATTTCCATAGATGTGTAAATGCTGATAAAATAAATTGGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

119

Amino Acids

13.14

Weight (kDa)

5.64

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	71, 75
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	6, 86, 269
AluI	AGCT	3 cut(s)	6, 86, 269
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	83, 266
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	95, 278
BccI	CCATC	2 cut(s)	4, 273
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	72, 75, 84, 267
BlsI	GCNGC	4 cut(s)	73, 76, 85, 268
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	104, 274
BmuI	ACTGGG	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 111, 141
Bse1I	ACTGG	2 cut(s)	107, 237
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	3 cut(s)	39, 284, 289
BseJI	GATNNNNATC	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	107, 237
BseRI	GAGGAG	1 cut(s)	40
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	95, 278
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	71, 75
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	197
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	107, 237
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	39, 284, 289
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 83, 92, 203, 272
BstPAI	GACNNNNGTC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	95, 278
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	39, 284, 289
BtsIMutI	CAGTG	1 cut(s)	114
CciNI	GCGGCCGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	181
CseI	GACGC	1 cut(s)	281
CviAII	CATG	5 cut(s)	57, 67, 79, 203, 290
CviJI	RGCY	4 cut(s)	6, 74, 86, 269
CviKI_1	RGCY	4 cut(s)	6, 74, 86, 269
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	5 cut(s)	60, 70, 82, 206, 293
FaiI	YATR	9 cut(s)	58, 68, 80, 170, 195, 204, 291, 311, 321
FatI	CATG	5 cut(s)	56, 66, 78, 202, 289
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	72, 75, 84, 267
FokI	GGATG	3 cut(s)	26, 291, 296
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	72, 75, 84, 267
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	72, 75, 84, 267
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	74
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	60, 70, 82, 206, 293
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	112, 130
Hpy188I	TCNGA	2 cut(s)	21, 187
Hpy8I	GTNNAC	2 cut(s)	112, 130
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	168, 266, 287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 83, 92, 203, 272
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	60, 70, 82, 206, 293
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	120, 250, 261
Lsp1109I	GCAGC	2 cut(s)	95, 278
LweI	GCATC	2 cut(s)	104, 274
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	5 cut(s)	34, 41, 163, 263, 297
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	313, 346
MnlI	CCTC	3 cut(s)	18, 21, 286
MslI	CAYNNNNRTG	3 cut(s)	173, 252, 324
MspA1I	CMGCKG	2 cut(s)	86, 269
MwoI	GCNNNNNNNGC	5 cut(s)	80, 83, 92, 203, 272
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	5 cut(s)	60, 70, 82, 206, 293
NmuCI	GTSAC	1 cut(s)	239
NotI	GCGGCCGC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	73, 76, 85, 268
PshAI	GACNNNNGTC	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	86, 269
RseI	CAYNNNNRTG	3 cut(s)	173, 252, 324
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	4 cut(s)	72, 75, 84, 267
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 88, 117, 135, 271, 297, 304
SfaNI	GCATC	2 cut(s)	104, 274
SmiMI	CAYNNNNRTG	3 cut(s)	173, 252, 324
Sse9I	AATT	2 cut(s)	313, 346
SsiI	CCGC	2 cut(s)	71, 75
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	313, 346
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	83, 266
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	45, 55, 153
TspRI	CASTG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.