Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

63132491 .. 63238467

Gene Structure 105977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG445200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGATGAAGATGATCAAGAATATTCATATCATCTCTCTTTCTTATTCTATCTTTTTAGTCTTCTCTAGTATTTTCGCGGCCGTGACGGCACAGAATAATCCGGTGAATGTGGAAGTCGGGGTGGTTCTTGATTTCGATAAGGGGTTTGGGAAGATGGGGCTGAGCTGCATCAAAATGTCTCTCTCTGACTTCTATGCCTCTCATCCCAATTACACCACCAGGCTGCTTCTGCACCAGAGGAACTCACCCACAGACGTTGTTCTTACAGCTGCTGCAGGGTTTTCAGGATCGAATTCAACACGCACGACAAATATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

106

Amino Acids

11.52

Weight (kDa)

9.3

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	165, 269
AluI	AGCT	2 cut(s)	165, 269
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	165, 223, 269, 272
ApoI	RAATTY	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	115, 237
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	152, 210, 256, 259
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	2 cut(s)	65, 102
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	78, 166, 224, 270, 273
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	5 cut(s)	79, 167, 225, 271, 274
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	152
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	4 cut(s)	152, 210, 256, 259
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	12, 287
Bsp1720I	GCTNAGC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	295
BssMI	GATC	2 cut(s)	12, 287
Bst2UI	CCWGG	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	15, 290
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	12, 287
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 229
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	152, 210, 256, 259
BstV2I	GAAGAC	1 cut(s)	52
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviJI	RGCY	5 cut(s)	80, 160, 165, 223, 269
CviKI_1	RGCY	5 cut(s)	80, 160, 165, 223, 269
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	14, 289
DpnII	GATC	2 cut(s)	12, 287
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	218
FaiI	YATR	2 cut(s)	27, 195
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	78, 166, 224, 270, 273
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	78, 166, 224, 270, 273
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	5 cut(s)	78, 166, 224, 270, 273
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	101
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	115, 237
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	16, 128, 285
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	168, 232, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 229
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 287
LpnPI	CCDG	6 cut(s)	114, 205, 232, 248, 261, 270
Lsp1109I	GCAGC	4 cut(s)	152, 210, 256, 259
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	14, 289
MboI	GATC	2 cut(s)	12, 287
MboII	GAAGA	3 cut(s)	19, 52, 163
MluCI	AATT	2 cut(s)	208, 292
MnlI	CCTC	2 cut(s)	208, 231
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	86, 229
NdeII	GATC	2 cut(s)	12, 287
NmuCI	GTSAC	1 cut(s)	82
PkrI	GCNGC	5 cut(s)	79, 167, 225, 271, 274
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	5 cut(s)	78, 166, 224, 270, 273
Sau3AI	GATC	2 cut(s)	12, 287
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	3 cut(s)	167, 258, 271
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	208, 292
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	2 cut(s)	22, 313
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	218
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	135, 290
TasI	AATT	2 cut(s)	208, 292
TauI	GCSGC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	165, 223, 269, 272
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	14, 20
XapI	RAATTY	1 cut(s)	292
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.