Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

65638415 .. 65639120

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG499800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTCAAGAATAATCCTATCCACCCTGTGTGTCTTCGCTTTCTGTTATTGATGTTTAATGTATTCCTGACCATGGCACAGAAGAAAACAACACCAGTAAATGTGGGTGTGATTCTTGAGTCGGATACATGGTTTGGGAAAATGGGGCTCAGCTGCATCAACATGGCTCTCTCTGACTTCTATGCCGTTCATGCTTACTACAATACTAGGATGGTTCCACACACAAGAGACTCCCGGAAAGAAATTGTTGTTGCAGCTGGTGCAGCTCTAGATTTAATAAATAATGTTGAAGTGCAAGCCATCATTGGGCCGGAATCATCTATGAAAGCCAAATTTGTTACTGACCTTGGAGATAAAGCTCAGGTGCCTGTAATCTCATTTTCAGCAACAAGCCCTTCCCTTCGGAGTTCATATTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

8.98

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	32 - 140	2.8e-06	Periplasmic binding protein
ANF_receptor	PF01094	52 - 137	1.9e-17	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	73, 306
AgsI	TTSAA	2 cut(s)	7, 290
AluBI	AGCT	4 cut(s)	153, 257, 266, 359
AluI	AGCT	4 cut(s)	153, 257, 266, 359
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	153, 254, 263
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	140, 266, 275
BccI	CCATC	2 cut(s)	205, 308
BceAI	ACGGC	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	207, 269
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	154, 255, 264
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	3 cut(s)	155, 256, 265
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	216, 366
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	72, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 306
Bse1I	ACTGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	72, 346
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	73, 306
BseMII	CTCAG	2 cut(s)	163, 374
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	140, 266, 275
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	235, 311
BslI	CCNNNNNNNGG	2 cut(s)	73, 306
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	162, 373
BspLI	GGNNCC	2 cut(s)	216, 366
BspT107I	GGYRCC	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	72, 346
BssT1I	CCWWGG	2 cut(s)	72, 346
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	149, 360
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 260, 263
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	140, 266, 275
BstV2I	GAAGAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	308
CviAII	CATG	4 cut(s)	73, 129, 163, 191
DdeI	CTNAG	2 cut(s)	149, 360
DraIII	CACNNNGTG	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	72, 346
Eco24I	GRGCYC	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	72, 346
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	72, 346
FaeI	CATG	4 cut(s)	76, 132, 166, 194
FaiI	YATR	7 cut(s)	74, 130, 164, 183, 192, 323, 412
FatI	CATG	4 cut(s)	72, 128, 162, 190
Fnu4HI	GCNGC	3 cut(s)	154, 255, 264
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	154, 255, 264
FspBI	CTAG	2 cut(s)	207, 269
GluI	GCNGC	3 cut(s)	154, 255, 264
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	235, 311
Hin1II	CATG	4 cut(s)	76, 132, 166, 194
HinfI	GANTC	4 cut(s)	112, 119, 230, 314
HpaII	CCGG	2 cut(s)	235, 311
Hpy188I	TCNGA	4 cut(s)	124, 175, 405, 422
Hpy188III	TCNNGA	4 cut(s)	7, 67, 116, 269
HpyAV	CCTTC	2 cut(s)	405, 410
HpyCH4V	TGCA	4 cut(s)	156, 254, 263, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 260, 263
HpyF3I	CTNAG	2 cut(s)	149, 360
Hsp92II	CATG	4 cut(s)	76, 132, 166, 194
LpnPI	CCDG	8 cut(s)	39, 80, 108, 243, 248, 324, 347, 381
Lsp1109I	GCAGC	3 cut(s)	140, 266, 275
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	207, 269
MaeIII	GTNAC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	26, 94
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	243, 332
MlyI	GAGTC	2 cut(s)	128, 224
MmeI	TCCRAC	1 cut(s)	102
MseI	TTAA	2 cut(s)	57, 275
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	153, 257
MspI	CCGG	2 cut(s)	235, 311
MspR9I	CCNGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	191, 260, 263
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	4 cut(s)	76, 132, 166, 194
NlaIV	GGNNCC	2 cut(s)	216, 366
PfeI	GAWTC	2 cut(s)	112, 314
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	155, 256, 265
PleI	GAGTC	2 cut(s)	127, 224
PpsI	GAGTC	2 cut(s)	127, 224
PspN4I	GGNNCC	2 cut(s)	216, 366
PspPI	GGNCC	1 cut(s)	308
PvuII	CAGCTG	2 cut(s)	153, 257
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	57, 275
SatI	GCNGC	3 cut(s)	154, 255, 264
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	128, 224
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	6 cut(s)	155, 259, 268, 348, 361, 366
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	243, 332
SspMI	CTAG	2 cut(s)	207, 269
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	72, 346
TasI	AATT	2 cut(s)	243, 332
TfiI	GAWTC	2 cut(s)	112, 314
Tru1I	TTAA	2 cut(s)	57, 275
Tru9I	TTAA	2 cut(s)	57, 275
TseI	GCWGC	3 cut(s)	153, 254, 263
TspDTI	ATGAA	3 cut(s)	179, 338, 399
XapI	RAATTY	1 cut(s)	332
XbaI	TCTAGA	1 cut(s)	268
XspI	CTAG	2 cut(s)	207, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.