Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

34296738 .. 34312547

Gene Structure 15810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTCGCCACCATGGCAGCTGCAAGCACAACGATAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGGACCGAGTGGGAAAATGTACTCGAGTTGCATCGAAATGGCGCTGTCGGATTTCTATGCTATCCATGCTGACTACAAGACTAGGCTCGTTTTGAACACCAGGAACTCCAATGGAGATGTGGTTGGAGCAGCTGCCGCAGGGGCGGCGGCTCTCTCGCTCAACCAGAGGGCGGATTTCAATGCCGTCTTTGTTTCAGGCGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

92

Amino Acids

9.44

Weight (kDa)

5.52

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	5 cut(s)	207, 215, 218, 242, 270
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	166, 250
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	20, 203
AluI	AGCT	2 cut(s)	20, 203
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	17, 20, 200, 203
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	7, 29, 190, 212
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	172
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	116
BglI	GCCNNNNNGGC	2 cut(s)	14, 212
BisI	GCNGC	8 cut(s)	18, 21, 201, 204, 207, 216, 219, 271
BlsI	GCNGC	8 cut(s)	19, 22, 202, 205, 208, 217, 220, 272
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	4 cut(s)	7, 29, 190, 212
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	94
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	5 cut(s)	207, 215, 218, 242, 270
BspANI	GGCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	25
BstDSI	CCRYGG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 137, 206, 212, 215
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	7, 29, 190, 212
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	13, 137
CviJI	RGCY	5 cut(s)	20, 157, 203, 221, 273
CviKI_1	RGCY	5 cut(s)	20, 157, 203, 221, 273
CviQI	GTAC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	16, 140
FaiI	YATR	3 cut(s)	14, 129, 138
FatI	CATG	2 cut(s)	12, 136
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	18, 21, 201, 204, 207, 216, 219, 271
Fsp4HI	GCNGC	8 cut(s)	18, 21, 201, 204, 207, 216, 219, 271
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	8 cut(s)	18, 21, 201, 204, 207, 216, 219, 271
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	16, 140
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	46, 64
Hpy188I	TCNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	46, 64
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	23, 102
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 137, 206, 212, 215
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	16, 140
HspAI	GCGC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	6 cut(s)	54, 157, 184, 195, 248, 252
Lsp1109I	GCAGC	4 cut(s)	7, 29, 190, 212
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	99, 175
MnlI	CCTC	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	20, 203
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	5 cut(s)	14, 137, 206, 212, 215
NcoI	CCATGG	1 cut(s)	12
NlaIII	CATG	2 cut(s)	16, 140
PaeR7I	CTCGAG	1 cut(s)	94
PkrI	GCNGC	8 cut(s)	19, 22, 202, 205, 208, 217, 220, 272
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	74
PspXI	VCTCGAGB	1 cut(s)	94
PvuII	CAGCTG	2 cut(s)	20, 203
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	107
SatI	GCNGC	8 cut(s)	18, 21, 201, 204, 207, 216, 219, 271
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	4 cut(s)	22, 51, 69, 205
SfaNI	GCATC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SsiI	CCGC	5 cut(s)	207, 215, 218, 242, 270
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	95, 105
TaqII	GACCGA	1 cut(s)	91
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	4 cut(s)	209, 218, 221, 273
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	4 cut(s)	17, 20, 200, 203
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.