Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

67174003 .. 67175312

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG512800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATGAAGAATCCTATCAACCCGGTTTTTCTTGTGTTGTTATTCTTTAGGATTTCCTTGAAGACCATGGCACGAAACACAACTTACCCAATAAATGTGGGTGTGGTTCTTGACTTGGATACCTCTTTTGGGAAAATCGGGCTGAGCTGCATCAAAATGGCCCTCTCTGACTTCTATGCCTCTCATGCTTACTACAGTACTAGGCTCGTCCTACACACGAGGGACTCCAAAGGAGATGTTGTTGTTGCAGCTGGTGCAGACCCGGGACCGGAAGTAGTAGTAGATGTTGTTGCTGACGTCCTCCGGGAGCTCGAGCCCAGAGCCTCCATGTCACAATTCCCCTCCACAACCCCAAAATCGGAGTCGCCGGAGACCAAAACGGAACGGGCTGTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

6.72

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	129, 268, 358
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	147, 251, 310
AluI	AGCT	3 cut(s)	147, 251, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	365
Ama87I	CYCGRG	2 cut(s)	262, 311
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	147, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	2 cut(s)	160, 266
AsuC2I	CCSGG	4 cut(s)	23, 263, 264, 305
AvaI	CYCGRG	2 cut(s)	262, 311
AvaII	GGWCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	312, 318
BauI	CACGAG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	134, 260
BciVI	GTATCC	1 cut(s)	112
BcnI	CCSGG	4 cut(s)	23, 263, 264, 305
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	148, 249
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	2 cut(s)	149, 250
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	4 cut(s)	23, 263, 264, 305
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	2 cut(s)	262, 311
BmgT120I	GGNCC	2 cut(s)	160, 266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	4 cut(s)	23, 263, 264, 305
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuMI	CCSGG	4 cut(s)	23, 263, 264, 305
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	66, 262
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 268, 358
BseDI	CCNNGG	2 cut(s)	66, 262
BseLI	CCNNNNNNNGG	3 cut(s)	129, 268, 358
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	134, 260
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	2 cut(s)	262, 311
BsiSI	CCGG	5 cut(s)	23, 263, 269, 304, 368
BslFI	GGGAC	2 cut(s)	236, 279
BslI	CCNNNNNNNGG	3 cut(s)	129, 268, 358
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	236, 279
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	2 cut(s)	262, 311
Bsp1286I	GDGCHC	2 cut(s)	312, 318
Bsp1720I	GCTNAGC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	66
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	66, 262
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 254
BstSCI	CCNGG	4 cut(s)	21, 261, 262, 303
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	134, 260
BstV2I	GAAGAC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	160, 266
Cfr9I	CCCGGG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	198
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	3 cut(s)	67, 185, 328
CviJI	RGCY	9 cut(s)	142, 147, 161, 205, 251, 310, 316, 323, 389
CviKI_1	RGCY	9 cut(s)	142, 147, 161, 205, 251, 310, 316, 323, 389
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	312, 318
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	310
Eco88I	CYCGRG	2 cut(s)	262, 311
EcoICRI	GAGCTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	312, 318
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	70, 188, 331
FaiI	YATR	4 cut(s)	68, 177, 186, 329
FaqI	GGGAC	2 cut(s)	236, 279
FatI	CATG	3 cut(s)	66, 184, 327
Fnu4HI	GCNGC	2 cut(s)	148, 249
FriOI	GRGCYC	2 cut(s)	312, 318
Fsp4HI	GCNGC	2 cut(s)	148, 249
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	148, 249
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	5 cut(s)	23, 263, 269, 304, 368
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	70, 188, 331
HinfI	GANTC	3 cut(s)	10, 224, 362
HpaII	CCGG	5 cut(s)	23, 263, 269, 304, 368
Hpy188I	TCNGA	2 cut(s)	169, 361
Hpy188III	TCNNGA	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	150, 248, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 254
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	70, 188, 331
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	36, 237, 276, 282, 317, 331, 381
Lsp1109I	GCAGC	2 cut(s)	134, 260
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	330, 391
MboII	GAAGA	2 cut(s)	19, 73
MhlI	GDGCHC	2 cut(s)	312, 318
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	218, 371
MnlI	CCTC	7 cut(s)	133, 173, 190, 213, 311, 334, 352
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	5 cut(s)	23, 263, 269, 304, 368
MspR9I	CCNGG	4 cut(s)	23, 263, 264, 305
MwoI	GCNNNNNNNGC	2 cut(s)	185, 254
NciI	CCSGG	4 cut(s)	23, 263, 264, 305
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	3 cut(s)	70, 188, 331
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	149, 250
PleI	GAGTC	2 cut(s)	218, 370
PpsI	GAGTC	2 cut(s)	218, 370
Psp124BI	GAGCTC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	160, 266
PspXI	VCTCGAGB	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	2 cut(s)	148, 249
Sau96I	GGNCC	2 cut(s)	160, 266
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	218, 371
ScrFI	CCNGG	4 cut(s)	23, 263, 264, 305
SduI	GDGCHC	2 cut(s)	312, 318
SetI	ASST	6 cut(s)	125, 149, 253, 300, 312, 398
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	311
SmaI	CCCGGG	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	335
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	4 cut(s)	21, 261, 262, 303
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	335
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	2 cut(s)	147, 248
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	395
TspMI	CCCGGG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	311
XmaI	CCCGGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.