Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

25946468 .. 25946875

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCACTGCCAGACTTCTATGCTACTCACGCTTACTACAAGACTAGGCTGGTTTTGAACGTTAGGAACTCCAAACAAAGTGTAATGCATGCAGCTGATGCAGCTCTGGATTTGATAAAGAATGTACAAGTGCAAGCTGTCCTAGGGCCAGTGTCATCGATGCAGGCAAACTTTGTTATTAATATTGGAGATGCAGCTCATGTGCCCATTATATCATTTTCAGCAACAAGCCCTTCTCTTACTTCATTGAGGAGCTCCTACTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

9.22

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 88	2.3e-19	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	60
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	5 cut(s)	95, 104, 137, 197, 255
AluI	AGCT	5 cut(s)	95, 104, 137, 197, 255
Alw21I	GWGCWC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	92, 101, 194
AseI	ATTAAT	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	146
AvrII	CCTAGG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	104, 113, 206
BfaI	CTAG	2 cut(s)	45, 143
BisI	GCNGC	3 cut(s)	93, 102, 195
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	3 cut(s)	94, 103, 196
BmgT120I	GGNCC	1 cut(s)	146
BmsI	GCATC	3 cut(s)	88, 150, 181
Bsa29I	ATCGAT	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	104, 113, 206
BshFI	GGCC	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	207, 257
Bsp1407I	TGTACA	1 cut(s)	124
BspANI	GGCC	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	90, 135, 165
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 98, 101
BstNSI	RCATGY	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	104, 113, 206
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	5, 156
Cac8I	GCNNGC	3 cut(s)	90, 135, 165
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	89, 200
CviJI	RGCY	8 cut(s)	49, 95, 104, 137, 148, 197, 231, 255
CviKI_1	RGCY	8 cut(s)	49, 95, 104, 137, 148, 197, 231, 255
CviQI	GTAC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	92, 203
FaiI	YATR	4 cut(s)	21, 90, 201, 212
FatI	CATG	2 cut(s)	88, 199
Fnu4HI	GCNGC	3 cut(s)	93, 102, 195
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	93, 102, 195
FspBI	CTAG	2 cut(s)	45, 143
GluI	GCNGC	3 cut(s)	93, 102, 195
HaeIII	GGCC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	92, 203
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	88, 92, 101, 133, 163, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 98, 101
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	92, 203
LmnI	GCTCC	2 cut(s)	252, 260
LpnPI	CCDG	5 cut(s)	24, 35, 92, 149, 162
Lsp1109I	GCAGC	3 cut(s)	104, 113, 206
LweI	GCATC	3 cut(s)	88, 150, 181
MaeI	CTAG	2 cut(s)	45, 143
MaeII	ACGT	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	207, 257
MnlI	CCTC	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	29, 98, 101
NlaIII	CATG	2 cut(s)	92, 203
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	94, 103, 196
PshBI	ATTAAT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	257
Psp1406I	AACGTT	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	93, 102, 195
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	207, 257
SetI	ASST	6 cut(s)	63, 97, 106, 139, 199, 257
SfaNI	GCATC	3 cut(s)	88, 150, 181
SphI	GCATGC	1 cut(s)	92
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	45, 143
SstI	GAGCTC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	142
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	158
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	12, 156
TseI	GCWGC	3 cut(s)	92, 101, 194
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	12, 156
VspI	ATTAAT	1 cut(s)	180
XceI	RCATGY	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	45, 143
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.