Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

67187287 .. 67187664

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG513000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAACCTTTAGCTTTAAGCATGATCAAGAATAATCCTATCAATCCTGTTTTTCTGCTCTTTTTCCGGTTCTTCAGGATTAATTTCTTGGCCTTGGCACAAAACACGACTATTCCAGTAAATGTGGGAGTGATTCTTGACTTGGATACCAGGTTTGGGAAATTGGGGCTGAGCTGCATCAACATGGCCCTCTCTGACTTTTATGCCTCTCATGCTTACTACCATACTAGGCTGGTCCTAGACAAAAGGGACTCTGAGGAAGATGTCGTTGTTGCAGCTGGTGCAGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

7.91

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	3 cut(s)	14, 174, 278
AluI	AGCT	3 cut(s)	14, 174, 278
AoxI	GGCC	2 cut(s)	90, 186
ApeKI	GCWGC	2 cut(s)	174, 275
AseI	ATTAAT	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	187, 235
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	161, 287
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	24
BfaI	CTAG	2 cut(s)	228, 239
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	175, 276
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	2 cut(s)	176, 277
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	187, 235
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	161, 246
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	161, 287
BshFI	GGCC	2 cut(s)	92, 188
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	92, 188
Bsp143I	GATC	1 cut(s)	24
Bsp1720I	GCTNAGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	92, 188
BspCNI	CTCAG	2 cut(s)	162, 247
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	170, 255
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 281
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	161, 287
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	92, 188
Cfr13I	GGNCC	2 cut(s)	187, 235
CsiI	ACCWGGT	1 cut(s)	149
CviAII	CATG	3 cut(s)	22, 184, 212
CviJI	RGCY	7 cut(s)	14, 92, 169, 174, 188, 232, 278
CviKI_1	RGCY	7 cut(s)	14, 92, 169, 174, 188, 232, 278
DdeI	CTNAG	2 cut(s)	170, 255
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	25, 187, 215
FaiI	YATR	5 cut(s)	23, 185, 204, 213, 225
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	21, 183, 211
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	175, 276
Fsp4HI	GCNGC	2 cut(s)	175, 276
FspBI	CTAG	2 cut(s)	228, 239
GluI	GCNGC	2 cut(s)	175, 276
HaeIII	GGCC	2 cut(s)	92, 188
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	3 cut(s)	25, 187, 215
HinfI	GANTC	2 cut(s)	133, 251
HpaII	CCGG	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	196, 256
Hpy188III	TCNNGA	3 cut(s)	28, 76, 137
HpyCH4V	TGCA	3 cut(s)	177, 275, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 281
HpyF3I	CTNAG	2 cut(s)	170, 255
Hsp92II	CATG	3 cut(s)	25, 187, 215
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	8 cut(s)	60, 61, 80, 129, 136, 163, 218, 264
Lsp1109I	GCAGC	2 cut(s)	161, 287
LweI	GCATC	1 cut(s)	186
MabI	ACCWGGT	1 cut(s)	149
MaeI	CTAG	2 cut(s)	228, 239
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	64, 272
MluCI	AATT	3 cut(s)	82, 161, 289
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	200, 217, 250
MseI	TTAA	3 cut(s)	17, 81, 288
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	212, 281
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	25, 187, 215
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	176, 277
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	187, 235
PvuII	CAGCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	17, 81, 288
SatI	GCNGC	2 cut(s)	175, 276
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	187, 235
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	5 cut(s)	10, 16, 155, 176, 280
SexAI	ACCWGGT	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	82, 161, 289
SspMI	CTAG	2 cut(s)	228, 239
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	93
TasI	AATT	3 cut(s)	82, 161, 289
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	17, 81, 288
Tru9I	TTAA	3 cut(s)	17, 81, 288
TseI	GCWGC	2 cut(s)	174, 275
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	81
XspI	CTAG	2 cut(s)	228, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.