Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

61928568 .. 61929790

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTCCAAAAAACCACCCTTCTAACCTTAGTAAGCTTGCTCTTTGTATCTTTGTCTTGTTTTTCTTCTTCATGGATTTGCTTGGCCATGCCACATAACAAAACCATCCCAGTGAATGTAGGAGTGATTCTTGATGACCTTCATTCTCAAACTGAGAATATTTGGTTGTGCCGCATCAAAATGGCTCTAAAGGACTTTTATGCTTCTCATGCTCACTACAGAACTAGGCTGGTTTTGAACATCAGGGAATGCAAAAAGGAGATCGTTGGTGCAGGCTGGTTCTCATGCTCACGCAGCCAGTTTATCATCACTGTATACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

107

Amino Acids

12.26

Weight (kDa)

9.14

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	172, 295
BlsI	GCNGC	2 cut(s)	173, 296
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	110, 298
BseGI	GGATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	110, 298
BseXI	GCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	110, 298
BssMI	GATC	1 cut(s)	261
BssNAI	GTATAC	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	38, 274
BstDEI	CTNAG	2 cut(s)	28, 153
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 294
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	306
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	117, 309
Cac8I	GCNNGC	2 cut(s)	38, 274
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	4 cut(s)	72, 88, 209, 285
CviJI	RGCY	6 cut(s)	36, 86, 185, 229, 276, 297
CviKI_1	RGCY	6 cut(s)	36, 86, 185, 229, 276, 297
DdeI	CTNAG	2 cut(s)	28, 153
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	4 cut(s)	75, 91, 212, 288
FaiI	YATR	7 cut(s)	73, 89, 96, 201, 210, 286, 316
FatI	CATG	4 cut(s)	71, 87, 208, 284
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	172, 295
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	172, 295
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	172, 295
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	75, 91, 212, 288
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	29, 149
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	252, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 294
HpyF3I	CTNAG	2 cut(s)	28, 153
Hsp92II	CATG	4 cut(s)	75, 91, 212, 288
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	123, 215, 229, 258, 262, 311
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	225
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	57, 60
MlsI	TGGCCA	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	110, 179
Msp20I	TGGCCA	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	209, 294
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	4 cut(s)	75, 91, 212, 288
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	173, 296
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	110, 179
SatI	GCNGC	2 cut(s)	172, 295
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	3 cut(s)	29, 38, 141
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	110, 179
SsiI	CCGC	1 cut(s)	172
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	2 cut(s)	117, 316
TseI	GCWGC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	60, 131
TspRI	CASTG	2 cut(s)	117, 316
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.