Rroxscaffold_4G00309230

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
30943158 .. 30943876
719 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00309230.1

Sequence Viewer

Length: 357 bp
ATGGCACAAACTAAAACCATCCCAGTGAACGTGGGAGTTGTTTTAGACCTCAATACACAGCATGGGAAAATTTGGTTGAGTTGCATCCAAATGGCACTGCCAGACTTCTATGCTACTCATGCTTACTACAAGACTAGGCTGGTTTTGAACATTGACTTGTCGCAAGTGAAAGCAATAAGTTGTATTGTCCAAAAATTCCAATGGAGACAAGTTGTGCCCATCTACGTAGACAATGAATTTGGTGAGGGAATCATACCTTATTTGACTTATGCCTTGCAAGAGGTTGATGCTCATGTTCCCTACCGTAGAGTAATTTCCTCCTTAGCCACTGAAGAACAAACTGTTGATGAGCTTTAG

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

5.48

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 52 - 115 3.5e-10 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AcsI RAATTY 3 cut(s) 69, 194, 236
AcuI CTGAAG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 199
ApoI RAATTY 3 cut(s) 69, 194, 236
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 219
BccI CCATC 2 cut(s) 26, 227
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 93, 277
BmuI ACTGGG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 18, 84
BseNI ACTGG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 305, 343
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 18, 84
BstMAI GTCTC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 219
BstSNI TACGTA 1 cut(s) 226
BtsCI GGATG 2 cut(s) 18, 84
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 30, 95, 327
CviAII CATG 3 cut(s) 62, 119, 293
CviJI RGCY 3 cut(s) 139, 326, 352
CviKI_1 RGCY 3 cut(s) 139, 326, 352
DdeI CTNAG 1 cut(s) 322
Eco105I TACGTA 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 351
FaeI CATG 3 cut(s) 65, 122, 296
FaiI YATR 6 cut(s) 63, 111, 120, 254, 270, 294
FatI CATG 3 cut(s) 61, 118, 292
FblI GTMKAC 1 cut(s) 228
FokI GGATG 2 cut(s) 5, 71
FspBI CTAG 1 cut(s) 135
Hin1II CATG 3 cut(s) 65, 122, 296
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 28, 229
Hpy8I GTNNAC 2 cut(s) 28, 229
HpyCH4III ACNGT 2 cut(s) 305, 343
HpyCH4IV ACGT 2 cut(s) 30, 225
HpyCH4V TGCA 2 cut(s) 84, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 2 cut(s) 30, 225
Hsp92II CATG 3 cut(s) 65, 122, 296
LpnPI CCDG 3 cut(s) 36, 114, 125
LweI GCATC 2 cut(s) 93, 277
MaeI CTAG 1 cut(s) 135
MaeII ACGT 2 cut(s) 30, 225
MboII GAAGA 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 4 cut(s) 69, 194, 236, 312
MnlI CCTC 4 cut(s) 59, 238, 274, 328
MslI CAYNNNNRTG 2 cut(s) 23, 89
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 65, 122, 296
PfeI GAWTC 1 cut(s) 249
Ppu21I YACGTR 1 cut(s) 226
RseI CAYNNNNRTG 2 cut(s) 23, 89
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 33, 51, 228, 259, 285, 354
SfaNI GCATC 2 cut(s) 93, 277
SmiMI CAYNNNNRTG 2 cut(s) 23, 89
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 4 cut(s) 69, 194, 236, 312
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 305, 343
TaiI ACGT 2 cut(s) 33, 228
TasI AATT 4 cut(s) 69, 194, 236, 312
TfiI GAWTC 1 cut(s) 249
TscAI CASTG 3 cut(s) 30, 102, 334
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 3 cut(s) 30, 102, 334
XapI RAATTY 3 cut(s) 69, 194, 236
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.