Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

34455793 .. 34471590

Gene Structure 15798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG281000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCAGCTGCAAGCACAACGATAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGGACCGAGTGGGAAAATGTACTCGAGTTGCATCGAAATGGCGCTGTCGGATTTCTATGCTATCCATGCTGACTACAAGACTAGGCTCGTTTTGAACACCAGGAACTCCAATGGAGATGTGGTTGGAGCAGCTGCCGCAGGGGCGGCGGCTCTCTCGCTCAACCAGAGGGCGGATTTCAATGCCGTCTTTGTTTCAGGCGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

88

Amino Acids

9.04

Weight (kDa)

5.52

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	5 cut(s)	195, 203, 206, 230, 258
AcoI	YGGCCR	1 cut(s)	259
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	154, 238
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	8, 191
AluI	AGCT	2 cut(s)	8, 191
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	4 cut(s)	5, 8, 188, 191
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	17, 178, 200
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	8 cut(s)	6, 9, 189, 192, 195, 204, 207, 259
BlsI	GCNGC	8 cut(s)	7, 10, 190, 193, 196, 205, 208, 260
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	17, 178, 200
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	82
BspACI	CCGC	5 cut(s)	195, 203, 206, 230, 258
BspANI	GGCC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 194, 200, 203
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	17, 178, 200
BstZI	CGGCCG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	8, 145, 191, 209, 261
CviKI_1	RGCY	5 cut(s)	8, 145, 191, 209, 261
CviQI	GTAC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	259
EagI	CGGCCG	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	117, 126
FatI	CATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	8 cut(s)	6, 9, 189, 192, 195, 204, 207, 259
Fsp4HI	GCNGC	8 cut(s)	6, 9, 189, 192, 195, 204, 207, 259
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	8 cut(s)	6, 9, 189, 192, 195, 204, 207, 259
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	34, 52
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	34, 52
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	11, 90
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 194, 200, 203
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	42, 145, 172, 183, 236, 240
Lsp1109I	GCAGC	3 cut(s)	17, 178, 200
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	36
MmeI	TCCRAC	2 cut(s)	87, 163
MnlI	CCTC	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	8, 191
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	125, 194, 200, 203
NlaIII	CATG	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	82
PkrI	GCNGC	8 cut(s)	7, 10, 190, 193, 196, 205, 208, 260
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	82
PvuII	CAGCTG	2 cut(s)	8, 191
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	8 cut(s)	6, 9, 189, 192, 195, 204, 207, 259
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	10, 39, 57, 193
SfaNI	GCATC	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SsiI	CCGC	5 cut(s)	195, 203, 206, 230, 258
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	83, 93
TaqII	GACCGA	1 cut(s)	79
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	4 cut(s)	197, 206, 209, 261
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	4 cut(s)	5, 8, 188, 191
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.