Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

67164520 .. 67168726

Gene Structure 4207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG512600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGAATCCTACCAACATGTTTTTTCTTCTCTTCTTGTTCTTCAGGATTTCCCTGGCATTGGCACAGAACACAACAATTCCAATAAATGTGGGTGTGGTTCTTGACTTGGATACCCAATTTGGCAAAATGGGGCTAAGCTGCATCAACATGGCCCTCTCTGATTTCTATGCCTCTCATGCTTACTACAGTACTAGGCTTGTCCTACACACCAGGGACTCCTCGAAAGATGTTGTTGTTGCAGCTGGTGCAGACACTAATTCTTCCGCGAGGGCATCAAGTGCGAACCGCATTGACTCACACATTGATCTTGAACAGCATGTCCGGACTGAGCATGCTGACTTGAATCCCAACACTCAAGCAACCCAAGAGATTGAAGATGCAATTGACTTGACCTCCTCCAGTGAACAGAGGCCAGTGCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

5.0

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	2 cut(s)	267, 289
AcuI	CTGAAG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	314, 346, 377
AjnI	CCWGG	2 cut(s)	54, 212
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	141, 245
AluI	AGCT	2 cut(s)	141, 245
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	2 cut(s)	153, 413
ApeKI	GCWGC	2 cut(s)	141, 242
AspS9I	GGNCC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	128, 254
BciT130I	CCWGG	2 cut(s)	56, 214
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	142, 243
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	143, 244
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	56, 214
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	56, 214
BmsI	GCATC	3 cut(s)	153, 284, 370
BpmI	CTGGAG	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	54, 213
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	402, 416
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	56, 214
BseDI	CCNNGG	2 cut(s)	54, 213
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	402, 416
BseRI	GAGGAG	2 cut(s)	211, 388
BseXI	GCAGC	2 cut(s)	128, 254
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	155, 415
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	155, 415
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	307
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	267, 289
BspANI	GGCC	2 cut(s)	155, 415
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	402, 416
BssECI	CCNNGG	2 cut(s)	54, 213
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	56, 214
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	248, 281
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	137, 330
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 248, 281
BstNI	CCWGG	2 cut(s)	56, 214
BstNSI	RCATGY	3 cut(s)	22, 323, 338
BstSCI	CCNGG	2 cut(s)	54, 212
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	128, 254
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	155, 415
BtsIMutI	CAGTG	2 cut(s)	409, 423
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	5 cut(s)	19, 151, 179, 320, 335
CviJI	RGCY	6 cut(s)	136, 141, 155, 199, 245, 415
CviKI_1	RGCY	6 cut(s)	136, 141, 155, 199, 245, 415
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	137, 330
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	54, 212
FaeI	CATG	5 cut(s)	22, 154, 182, 323, 338
FaiI	YATR	6 cut(s)	20, 152, 171, 180, 321, 336
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	5 cut(s)	18, 150, 178, 319, 334
Fnu4HI	GCNGC	2 cut(s)	142, 243
Fsp4HI	GCNGC	2 cut(s)	142, 243
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	142, 243
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	155, 415
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	5 cut(s)	22, 154, 182, 323, 338
HinfI	GANTC	4 cut(s)	7, 218, 296, 346
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	46, 104, 311, 325
Hpy8I	GTNNAC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	144, 242, 251, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 248, 281
HpyF3I	CTNAG	2 cut(s)	137, 330
Hsp92II	CATG	5 cut(s)	22, 154, 182, 323, 338
Kpn2I	TCCGGA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	31, 41, 68, 199, 226, 231, 338, 415
Lsp1109I	GCAGC	2 cut(s)	128, 254
LweI	GCATC	3 cut(s)	153, 284, 370
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	20, 25, 34, 255, 389
MfeI	CAATTG	1 cut(s)	384
MluCI	AATT	4 cut(s)	78, 119, 259, 384
MlyI	GAGTC	2 cut(s)	212, 290
MnlI	CCTC	7 cut(s)	167, 184, 232, 264, 405, 406, 409
MroI	TCCGGA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	56, 214
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	2 cut(s)	56, 214
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	179, 248, 281
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	5 cut(s)	22, 154, 182, 323, 338
NspI	RCATGY	3 cut(s)	22, 323, 338
PaeI	GCATGC	1 cut(s)	338
PciI	ACATGT	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	7, 346
PkrI	GCNGC	2 cut(s)	143, 244
PleI	GAGTC	2 cut(s)	212, 290
PpsI	GAGTC	2 cut(s)	212, 290
PscI	ACATGT	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	54, 212
PspGI	CCWGG	2 cut(s)	54, 212
PspPI	GGNCC	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	2 cut(s)	142, 243
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	212, 290
ScrFI	CCNGG	2 cut(s)	56, 214
SetI	ASST	3 cut(s)	143, 247, 398
SfaNI	GCATC	3 cut(s)	153, 284, 370
SfcI	CTRYAG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	4 cut(s)	78, 119, 259, 384
SsiI	CCGC	2 cut(s)	267, 289
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	54, 212
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	224
TasI	AATT	4 cut(s)	78, 119, 259, 384
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	7, 346
TscAI	CASTG	2 cut(s)	409, 423
TseI	GCWGC	2 cut(s)	141, 242
TspRI	CASTG	2 cut(s)	409, 423
XceI	RCATGY	3 cut(s)	22, 323, 338
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.