Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

37742760 .. 37749374

Gene Structure 6615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATTCCAGTGGGGCTTGTTCTCGATGACTATAGTTCAGTGCGGGGCAAGATTTTGTTCAGTGTCTTCCAAATGGCCCTCTCCGACATCTCTGCTTATCACCCTAGCTACAAGACCAGACTGGTCTTGAAAACTAGGGAGTCGAAAAAAAATGTTGTTGGGGCAGCTGCCGCTGTTCATCGTGAGCTGGAAATTAAGCCGATCGATCCTGATGAGAAACAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

75

Amino Acids

8.37

Weight (kDa)

9.05

Isoelectric Point (pI)

19.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 171
AclWI	GGATC	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	108, 167, 187
AluI	AGCT	3 cut(s)	108, 167, 187
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	164, 167
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	154, 176
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BfaI	CTAG	2 cut(s)	105, 135
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	3 cut(s)	165, 168, 171
BlsI	GCNGC	3 cut(s)	166, 169, 172
BmgT120I	GGNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	8, 126
BseCI	ATCGAT	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	8, 126
BseXI	GCAGC	2 cut(s)	154, 176
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	201, 205
BspACI	CCGC	2 cut(s)	43, 171
BspANI	GGCC	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	204
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	8, 126
BssMI	GATC	2 cut(s)	201, 205
BstKTI	GATC	2 cut(s)	204, 208
BstMBI	GATC	2 cut(s)	201, 205
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	154, 176
BstV2I	GAAGAC	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	15, 45, 67
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	204
CviJI	RGCY	6 cut(s)	16, 77, 108, 167, 187, 199
CviKI_1	RGCY	6 cut(s)	16, 77, 108, 167, 187, 199
DpnI	GATC	2 cut(s)	203, 207
DpnII	GATC	2 cut(s)	201, 205
FaiI	YATR	2 cut(s)	33, 226
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	165, 168, 171
Fsp4HI	GCNGC	3 cut(s)	165, 168, 171
FspBI	CTAG	2 cut(s)	105, 135
GluI	GCNGC	3 cut(s)	165, 168, 171
HaeIII	GGCC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	4, 140
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	23, 127, 182, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	201, 205
LpnPI	CCDG	5 cut(s)	21, 107, 130, 173, 222
Lsp1109I	GCAGC	2 cut(s)	154, 176
MaeI	CTAG	2 cut(s)	105, 135
MalI	GATC	2 cut(s)	203, 207
MboI	GATC	2 cut(s)	201, 205
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	167, 173
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	201, 205
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	166, 169, 172
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	165, 168, 171
Sau3AI	GATC	2 cut(s)	201, 205
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	149
SetI	ASST	3 cut(s)	110, 169, 189
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	43, 171
SspMI	CTAG	2 cut(s)	105, 135
TaqI	TCGA	3 cut(s)	24, 143, 204
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	15, 45, 67
TseI	GCWGC	2 cut(s)	164, 167
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	15, 45, 67
XspI	CTAG	2 cut(s)	105, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.