Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

26670946 .. 26672740

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGATTGAAGTTACAAATGATTTTGGAGAGATGGAGAGCAGAAAAATTGCAGTTGGCAATGTACATATGGGAGATGGAGAGCAGGAGAAGATTCGGGGTTTATTCCCTTCAGACTTGCCCACTAGTCAGAACAATTGCAGTTGGCGATGTAGAGCTAGTTGAGCCATGCAATTTCGTTATAACAAACTCTTCGTTAATAATTTCCTTGGCCGTTGCACAAGACACAACTGTCCCAGTGAATGTGGGTGTGGTCCTCGATGTTGATTCATTGTTTGGAAAGATTGGGCTAAGCTGCATCAATATGGCCATCTCAGACTTCTATGCCTCTCATGCTTCTTACAAGACTAGGCTGCTGCTCCACATAAGGGACTCCAAGGGAGATGTTGTTGTTGAAGCTGGTGAAGGTTCTCTCCATCTCTCTTTCCCTTTTTCCATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

5.88

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AasI	GACNNNNNNGTC	1 cut(s)	230
AcoI	YGGCCR	2 cut(s)	210, 306
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	10, 395
AhlI	ACTAGT	1 cut(s)	124
AluBI	AGCT	3 cut(s)	157, 294, 398
AluI	AGCT	3 cut(s)	157, 294, 398
AoxI	GGCC	2 cut(s)	210, 306
ApeKI	GCWGC	3 cut(s)	294, 352, 355
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	281, 339, 342
BccI	CCATC	4 cut(s)	27, 70, 317, 423
BceAI	ACGGC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	3 cut(s)	125, 158, 348
BisI	GCNGC	3 cut(s)	295, 353, 356
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	3 cut(s)	296, 354, 357
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	207, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	207, 375
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	281, 339, 342
BshFI	GGCC	2 cut(s)	212, 308
BslFI	GGGAC	2 cut(s)	218, 383
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	218, 383
BsnI	GGCC	2 cut(s)	212, 308
Bsp1407I	TGTACA	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	212, 308
BspCNI	CTCAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	207, 375
BssT1I	CCWWGG	2 cut(s)	207, 375
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	290, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 332
BstV1I	GCAGC	3 cut(s)	281, 339, 342
BsuRI	GGCC	2 cut(s)	212, 308
BtgZI	GCGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	168, 332
CviJI	RGCY	8 cut(s)	157, 166, 212, 289, 294, 308, 352, 398
CviKI_1	RGCY	8 cut(s)	157, 166, 212, 289, 294, 308, 352, 398
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	290, 313
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	210, 306
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	207, 375
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	207, 375
ErhI	CCWWGG	2 cut(s)	207, 375
FaeI	CATG	2 cut(s)	171, 335
FaiI	YATR	9 cut(s)	68, 70, 169, 182, 305, 324, 333, 365, 437
FaqI	GGGAC	2 cut(s)	218, 383
FatI	CATG	2 cut(s)	167, 331
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	295, 353, 356
Fsp4HI	GCNGC	3 cut(s)	295, 353, 356
FspBI	CTAG	3 cut(s)	125, 158, 348
GluI	GCNGC	3 cut(s)	295, 353, 356
HaeIII	GGCC	2 cut(s)	212, 308
Hin1II	CATG	2 cut(s)	171, 335
HinfI	GANTC	3 cut(s)	93, 266, 371
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	114, 131, 316
HpyAV	CCTTC	2 cut(s)	119, 398
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	52, 140, 171, 218, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 332
HpyF3I	CTNAG	2 cut(s)	290, 313
Hsp92II	CATG	2 cut(s)	171, 335
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	3 cut(s)	70, 249, 384
Lsp1109I	GCAGC	3 cut(s)	281, 339, 342
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	3 cut(s)	125, 158, 348
MaeIII	GTNAC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	102, 183
MfeI	CAATTG	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	47, 135, 172, 201
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	2 cut(s)	266, 337
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	308
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	163, 332
NdeI	CATATG	1 cut(s)	68
NlaIII	CATG	2 cut(s)	171, 335
PfeI	GAWTC	2 cut(s)	93, 266
PkrI	GCNGC	3 cut(s)	296, 354, 357
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	3 cut(s)	295, 353, 356
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	365
SetI	ASST	4 cut(s)	159, 296, 400, 409
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	4 cut(s)	47, 135, 172, 201
SspMI	CTAG	3 cut(s)	125, 158, 348
StyI	CCWWGG	2 cut(s)	207, 375
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	47, 135, 172, 201
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	93, 266
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	3 cut(s)	294, 352, 355
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	3 cut(s)	125, 158, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.