Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

68051168 .. 68051801

Gene Structure 634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCATTTATCCTTACTAAAATACTAGGATGGTTCTACACACGAGACTCCCGAAAAGAAATTGTTGTTGCAGCTGGTGCAGCTCTAGATTTAATAAATAATGTTCAAGTGCAAGCCATCATTGGGCCGGAATCATCTATGAAAGCCAAATTTGTTACTGACCTTGGAGATAAAGCTCAGGTGCCTATAATCTCATTTTCAGCAACAAGCCCTTCCCTTTGGAGTTCATATTTTTTCCGAATTGCACAAAGTGACTCATCTCAAGTGAAAGCCATAAGTTCATCATCCAAGCATTTGGTTGGAATGAAGCAGTGCCGATCAGCGTGGATGATGAGTTTGGGGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

116

Amino Acids

12.76

Weight (kDa)

9.66

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	13 - 95	3.5e-17	Receptor family ligand binding region
Peripla_BP_6	PF13458	15 - 94	9.5e-07	Periplasmic binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	3 cut(s)	74, 83, 176
AluI	AGCT	3 cut(s)	74, 83, 176
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	71, 80
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	83, 92
BccI	CCATC	2 cut(s)	24, 125
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	26, 86
BisI	GCNGC	2 cut(s)	72, 81
BlsI	GCNGC	2 cut(s)	73, 82
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	3 cut(s)	35, 284, 333
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	83, 92
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	35, 284, 333
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 80
BstV1I	GCAGC	2 cut(s)	83, 92
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	35, 284, 333
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	125
CviJI	RGCY	8 cut(s)	74, 83, 116, 127, 146, 176, 210, 272
CviKI_1	RGCY	8 cut(s)	74, 83, 116, 127, 146, 176, 210, 272
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
DraIII	CACNNNGTG	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaiI	YATR	4 cut(s)	140, 188, 229, 275
Fnu4HI	GCNGC	2 cut(s)	72, 81
FokI	GGATG	3 cut(s)	42, 271, 340
Fsp4HI	GCNGC	2 cut(s)	72, 81
FspBI	CTAG	2 cut(s)	26, 86
GluI	GCNGC	2 cut(s)	72, 81
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	3 cut(s)	47, 131, 254
HpaII	CCGG	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	51, 86
HpyAV	CCTTC	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	71, 80, 112, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 80
HpyF3I	CTNAG	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	317
LpnPI	CCDG	3 cut(s)	60, 141, 164
Lsp1109I	GCAGC	2 cut(s)	83, 92
MaeI	CTAG	2 cut(s)	26, 86
MaeIII	GTNAC	2 cut(s)	154, 251
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MluCI	AATT	3 cut(s)	60, 149, 240
MlyI	GAGTC	2 cut(s)	41, 248
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	77, 80
NdeII	GATC	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	73, 82
PleI	GAGTC	2 cut(s)	41, 248
PpsI	GAGTC	2 cut(s)	41, 248
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	72, 81
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	41, 248
SetI	ASST	5 cut(s)	76, 85, 165, 178, 183
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	3 cut(s)	60, 149, 240
SspMI	CTAG	2 cut(s)	26, 86
StyI	CCWWGG	1 cut(s)	163
TasI	AATT	3 cut(s)	60, 149, 240
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	71, 80
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	155, 216, 270, 320
TspRI	CASTG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	85
XspI	CTAG	2 cut(s)	26, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.