Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

66880038 .. 66883002

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG456700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATCAACAAAAAGTACCCTTCCCACCTTAATAAGCTTGCTCTTATTTTTATCTTTTTCTTGTTTCTTTCTCCATCGATTTCGATGGCCAAGCCCCAAAACGAAAGCACTACTCCAGTGAATGTGGGGGTCGTTCTTGATGACCTTAATCATTCAGTTAGTGGGAAGATTTGGTTGAGTTGCATTGAAATGGCCCTCTCAGACTTCTATGTATCTCGTCCTCACTACAACACTAGGTTGGTCTTGAAAATCAGGGAGTACAAACAAAACAGTGTTCTCGGCGCAGCCAAAGCAGGAATTCACCAGGCAATAGGATTAGTTATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

109

Amino Acids

12.16

Weight (kDa)

9.56

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	2 cut(s)	17, 260
AgsI	TTSAA	2 cut(s)	188, 247
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AoxI	GGCC	2 cut(s)	87, 192
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	79, 82
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	89, 194
BshVI	ATCGAT	1 cut(s)	77
BsnI	GGCC	2 cut(s)	89, 194
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	2 cut(s)	89, 194
BspCNI	CTCAG	1 cut(s)	212
BspDI	ATCGAT	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	89, 194
BsuTUI	ATCGAT	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	123, 277
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	16, 259
CviJI	RGCY	5 cut(s)	37, 89, 94, 194, 287
CviKI_1	RGCY	5 cut(s)	37, 89, 94, 194, 287
CviQI	GTAC	2 cut(s)	16, 259
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	303
FaiI	YATR	3 cut(s)	210, 323, 328
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	89, 194
HhaI	GCGC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	35
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	137, 244
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	129, 238, 279, 290, 317
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	2 cut(s)	206, 231
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	30, 147
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	3
NmeAIII	GCCGAG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	17, 260
RsaNI	GTAC	2 cut(s)	16, 259
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	30, 147
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	4 cut(s)	30, 39, 147, 239
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	297
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	77, 83
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	30, 147
Tru9I	TTAA	2 cut(s)	30, 147
TscAI	CASTG	2 cut(s)	123, 277
TseI	GCWGC	1 cut(s)	284
TspRI	CASTG	2 cut(s)	123, 277
XapI	RAATTY	1 cut(s)	297
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.