Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004838.1

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

60583 .. 64063

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004838.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgatcccaatagatgtgggtatgatccttgactttgattctttgtttgggaagattgggctgagctgcgtcaacatggctctatccgacttctatgcctctcatgcttactataaaaccaggctggtactacacacaagggactccatgagagatgctgttgttgaagcggctgcaggttcactccctatatctctagtttctactctttttcatgtgttgtttttgttccatgcgtatacatctacttcctcctctcgctctccttcctccatcctattcttttgttgtagcgtcaatctgtggggtctagcttggagtgttcgagatgtttggcagacgtcgggtccggaagtttttggcggacgatggttcagaaagcgaatccctctttctttttttttatttggacgtgggccgcgtcttgggctgacacgtcgtggactgcggcttgggctacgtccctttttttttctttctcttcctggttttttttttcctttcactagtggatttgctgctggtccggtgactttgtggccggtttctggagaggtggttccagttcctggaggctggggtcagggtagcgacggtggccgatttttgacggtgaaaggcgatctggaagcttgtgaaccggcagggatatttttctctttttggagagctggttcggtactttttcagcaggttccggtgatgccgccggtggttctgagcttttgggatcgagagcttcaagctaggggtcgatggttgctagggtttgaaggctacaattttagggtttcaaggttagggcttcgtgctgataatgtgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

275

Amino Acids

30.64

Weight (kDa)

9.79

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	344
Acc36I	ACCTGC	2 cut(s)	167, 682
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	1 cut(s)	421
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	5 cut(s)	170, 363, 419, 448, 707
AclWI	GGATC	2 cut(s)	19, 738
AcoI	YGGCCR	2 cut(s)	539, 598
AcyI	GRCGYC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	129, 681
AfiI	CCNNNNNNNGG	3 cut(s)	425, 548, 569
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	167, 743, 773, 795
AhdI	GACNNNNNGTC	1 cut(s)	345
AhlI	ACTAGT	1 cut(s)	506
AjiI	CACGTC	2 cut(s)	413, 437
AjnI	CCWGG	3 cut(s)	119, 484, 568
AloI	GAACNNNNNNTCC	4 cut(s)	543, 575, 658, 690
AluBI	AGCT	7 cut(s)	66, 314, 632, 671, 723, 739, 746
AluI	AGCT	7 cut(s)	66, 314, 632, 671, 723, 739, 746
AlwI	GGATC	2 cut(s)	19, 738
AlwNI	CAGNNNCTG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	3 cut(s)	416, 539, 598
ApeKI	GCWGC	3 cut(s)	66, 173, 518
AspS9I	GGNCC	3 cut(s)	347, 416, 524
AsuHPI	GGTGA	3 cut(s)	541, 625, 712
AvaII	GGWCC	2 cut(s)	347, 524
BbvI	GCAGC	3 cut(s)	53, 160, 505
BccI	CCATC	3 cut(s)	281, 363, 750
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	3 cut(s)	121, 486, 570
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	5 cut(s)	197, 311, 507, 747, 764
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	2 cut(s)	167, 682
BisI	GCNGC	7 cut(s)	67, 171, 174, 419, 449, 519, 707
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	7 cut(s)	68, 172, 175, 420, 450, 520, 708
Bme1390I	CCNGG	3 cut(s)	121, 486, 570
Bme18I	GGWCC	2 cut(s)	347, 524
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgBI	CACGTC	2 cut(s)	413, 437
BmgT120I	GGNCC	3 cut(s)	347, 416, 524
BmiI	GGNNCC	3 cut(s)	348, 561, 696
BmrFI	CCNGG	3 cut(s)	121, 486, 570
BmsI	GCATC	2 cut(s)	145, 693
BpmI	CTGGAG	2 cut(s)	570, 591
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	341
BsaWI	WCCGGW	3 cut(s)	349, 526, 697
BsaXI	ACNNNNNCTCC	4 cut(s)	543, 573, 658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 548, 569
Bse118I	RCCGGY	3 cut(s)	541, 640, 709
Bse1I	ACTGG	1 cut(s)	563
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	121, 486, 570
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	425, 548, 569
BseMII	CTCAG	2 cut(s)	53, 710
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	53, 160, 505
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	418, 541, 600
BsiSI	CCGG	6 cut(s)	350, 527, 542, 641, 698, 710
BslFI	GGGAC	2 cut(s)	155, 447
BslI	CCNNNNNNNGG	3 cut(s)	425, 548, 569
BsmFI	GGGAC	2 cut(s)	155, 447
BsnI	GGCC	3 cut(s)	418, 541, 600
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	3, 24, 622, 730
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	5 cut(s)	170, 363, 419, 448, 707
BspANI	GGCC	3 cut(s)	418, 541, 600
BspCNI	CTCAG	2 cut(s)	54, 711
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	348, 561, 696
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	2 cut(s)	167, 682
BspPI	GGATC	2 cut(s)	19, 738
BsrFI	RCCGGY	3 cut(s)	541, 640, 709
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	3 cut(s)	541, 640, 709
BssMI	GATC	4 cut(s)	3, 24, 622, 730
BssNAI	GTATAC	1 cut(s)	240
BssNI	GRCGYC	1 cut(s)	341
Bst1107I	GTATAC	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	121, 486, 570
Bst4CI	ACNGT	2 cut(s)	596, 613
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	62, 719
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	6, 27, 625, 733
BstMBI	GATC	4 cut(s)	3, 24, 622, 730
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 427, 454, 597
BstNI	CCWGG	3 cut(s)	121, 486, 570
BstSCI	CCNGG	3 cut(s)	119, 484, 568
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	3 cut(s)	53, 160, 505
BstZ17I	GTATAC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	418, 541, 600
BtrI	CACGTC	2 cut(s)	413, 437
BtsCI	GGATG	1 cut(s)	273
BveI	ACCTGC	2 cut(s)	167, 682
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr10I	RCCGGY	3 cut(s)	541, 640, 709
Cfr13I	GGNCC	3 cut(s)	347, 416, 524
CseI	GACGC	3 cut(s)	58, 283, 410
Csp6I	GTAC	2 cut(s)	128, 680
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	5 cut(s)	76, 104, 148, 215, 233
CviQI	GTAC	2 cut(s)	128, 680
DdeI	CTNAG	2 cut(s)	62, 719
DpnI	GATC	4 cut(s)	5, 26, 624, 732
DpnII	GATC	4 cut(s)	3, 24, 622, 730
DraIII	CACNNNGTG	1 cut(s)	440
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	2 cut(s)	539, 598
Eam1104I	CTCTTC	1 cut(s)	486
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	347, 524
EcoRII	CCWGG	3 cut(s)	119, 484, 568
FaeI	CATG	5 cut(s)	79, 107, 151, 218, 236
FaqI	GGGAC	2 cut(s)	155, 447
FatI	CATG	5 cut(s)	75, 103, 147, 214, 232
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	7 cut(s)	67, 171, 174, 419, 449, 519, 707
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	7 cut(s)	67, 171, 174, 419, 449, 519, 707
FspBI	CTAG	5 cut(s)	197, 311, 507, 747, 764
GluI	GCNGC	7 cut(s)	67, 171, 174, 419, 449, 519, 707
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	2 cut(s)	570, 591
HaeIII	GGCC	3 cut(s)	418, 541, 600
HapII	CCGG	6 cut(s)	350, 527, 542, 641, 698, 710
HgaI	GACGC	3 cut(s)	58, 283, 410
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	5 cut(s)	79, 107, 151, 218, 236
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	3 cut(s)	38, 143, 384
HpaII	CCGG	6 cut(s)	350, 527, 542, 641, 698, 710
HphI	GGTGA	3 cut(s)	541, 625, 712
Hpy166II	GTNNAC	5 cut(s)	73, 182, 240, 443, 638
Hpy188I	TCNGA	3 cut(s)	88, 377, 720
Hpy188III	TCNNGA	5 cut(s)	326, 350, 549, 626, 734
Hpy8I	GTNNAC	5 cut(s)	73, 182, 240, 443, 638
Hpy99I	CGWCG	3 cut(s)	346, 441, 596
HpyAV	CCTTC	2 cut(s)	276, 767
HpyCH4III	ACNGT	2 cut(s)	596, 613
HpyCH4IV	ACGT	4 cut(s)	341, 412, 436, 460
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 427, 454, 597
HpyF3I	CTNAG	2 cut(s)	62, 719
HpySE526I	ACGT	4 cut(s)	341, 412, 436, 460
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	5 cut(s)	79, 107, 151, 218, 236
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	3, 24, 622, 730
Lsp1109I	GCAGC	3 cut(s)	53, 160, 505
LweI	GCATC	2 cut(s)	145, 693
MaeI	CTAG	5 cut(s)	197, 311, 507, 747, 764
MaeII	ACGT	4 cut(s)	341, 412, 436, 460
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	5, 26, 624, 732
MboI	GATC	4 cut(s)	3, 24, 622, 730
MboII	GAAGA	2 cut(s)	64, 473
MluCI	AATT	1 cut(s)	781
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	7 cut(s)	109, 262, 265, 280, 399, 547, 566
MroI	TCCGGA	1 cut(s)	349
MspI	CCGG	6 cut(s)	350, 527, 542, 641, 698, 710
MspR9I	CCNGG	3 cut(s)	121, 486, 570
MvaI	CCWGG	3 cut(s)	121, 486, 570
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	4 cut(s)	104, 427, 454, 597
NdeII	GATC	4 cut(s)	3, 24, 622, 730
NlaIII	CATG	5 cut(s)	79, 107, 151, 218, 236
NlaIV	GGNNCC	3 cut(s)	348, 561, 696
NmuCI	GTSAC	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	38, 384
PflMI	CCANNNNNTGG	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	7 cut(s)	68, 172, 175, 420, 450, 520, 708
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	119, 484, 568
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	3 cut(s)	119, 484, 568
PspN4I	GGNNCC	3 cut(s)	348, 561, 696
PspPI	GGNCC	3 cut(s)	347, 416, 524
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	129, 681
RsaNI	GTAC	2 cut(s)	128, 680
SatI	GCNGC	7 cut(s)	67, 171, 174, 419, 449, 519, 707
Sau3AI	GATC	4 cut(s)	3, 24, 622, 730
Sau96I	GGNCC	3 cut(s)	347, 416, 524
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	121, 486, 570
SfaNI	GCATC	2 cut(s)	145, 693
SfcI	CTRYAG	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	709
SinI	GGWCC	2 cut(s)	347, 524
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	1 cut(s)	781
SsiI	CCGC	5 cut(s)	170, 363, 419, 448, 707
SspMI	CTAG	5 cut(s)	197, 311, 507, 747, 764
StyD4I	CCNGG	3 cut(s)	119, 484, 568
TaaI	ACNGT	2 cut(s)	596, 613
TaiI	ACGT	4 cut(s)	344, 415, 439, 463
TaqI	TCGA	3 cut(s)	325, 733, 754
TasI	AATT	1 cut(s)	781
TauI	GCSGC	4 cut(s)	173, 421, 451, 709
TfiI	GAWTC	2 cut(s)	38, 384
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	66, 173, 518
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	347, 524
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	5 cut(s)	197, 311, 507, 747, 764
ZraI	GACGTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.