Rmu_sc0003863.1_g000011

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003863.1
OG0000721
Physical Location & Seq
Forward (+)
69670 .. 70005
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003863.1_g000011.1.cds

Sequence Viewer

Length: 336 bp
atgaagaagaagatgagtacatcaaccctcgtcttttcttccttaatcgtcttctctctatcgtcaagtattttgttggtgatgggacagaagacgagtgtctcagtgaatgttggtgtgattcttgatgaccttgagtctgtaagttcaaaagttaggctgagctgcatcgaatcggccatctcagacttttatagctctcgtggaaacactcaaacgaggctggttctgagcattagggacgccagaggtgatgttgtcgatgccgctgctgcaggtatctctctagttcccattccattcatttacgtacattcatttgcaataattttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

8.93

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AciI CCGC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 19, 312
AgsI TTSAA 1 cut(s) 150
AhdI GACNNNNNGTC 1 cut(s) 136
AluBI AGCT 2 cut(s) 165, 198
AluI AGCT 2 cut(s) 165, 198
Alw26I GTCTC 1 cut(s) 106
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 165, 269, 272
AsuHPI GGTGA 2 cut(s) 91, 263
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 43, 98
BbvI GCAGC 3 cut(s) 152, 256, 259
BccI CCATC 2 cut(s) 76, 188
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 4 cut(s) 166, 267, 270, 273
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 4 cut(s) 167, 268, 271, 274
BmeRI GACNNNNNGTC 1 cut(s) 136
BmsI GCATC 2 cut(s) 177, 253
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 2 cut(s) 43, 98
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 243
BseMII CTCAG 4 cut(s) 117, 152, 198, 221
BseXI GCAGC 3 cut(s) 152, 256, 259
BshFI GGCC 1 cut(s) 179
BslFI GGGAC 2 cut(s) 99, 254
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 99, 254
BsnI GGCC 1 cut(s) 179
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 4 cut(s) 116, 153, 197, 222
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 266
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 103, 161, 184, 230
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 273
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 3 cut(s) 152, 256, 259
BstV2I GAAGAC 2 cut(s) 43, 98
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 266
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 18, 311
CviJI RGCY 5 cut(s) 160, 165, 179, 198, 223
CviKI_1 RGCY 5 cut(s) 160, 165, 179, 198, 223
CviQI GTAC 2 cut(s) 18, 311
DdeI CTNAG 4 cut(s) 103, 161, 184, 230
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 310
FaiI YATR 1 cut(s) 195
FaqI GGGAC 2 cut(s) 99, 254
Fnu4HI GCNGC 4 cut(s) 166, 267, 270, 273
Fsp4HI GCNGC 4 cut(s) 166, 267, 270, 273
FspBI CTAG 1 cut(s) 287
GluI GCNGC 4 cut(s) 166, 267, 270, 273
HaeIII GGCC 1 cut(s) 179
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 243
HinfI GANTC 3 cut(s) 121, 137, 173
HphI GGTGA 2 cut(s) 91, 263
Hpy188I TCNGA 2 cut(s) 187, 231
Hpy188III TCNNGA 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 168, 275, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 103, 161, 184, 230
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 243
LpnPI CCDG 3 cut(s) 209, 259, 261
Lsp1109I GCAGC 3 cut(s) 152, 256, 259
LweI GCATC 2 cut(s) 177, 253
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 309
MboII GAAGA 6 cut(s) 16, 19, 22, 30, 43, 103
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 38, 213, 242
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 121, 173
PkrI GCNGC 4 cut(s) 167, 268, 271, 274
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 2 cut(s) 19, 312
RsaNI GTAC 2 cut(s) 18, 311
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 4 cut(s) 166, 267, 270, 273
SchI GAGTC 1 cut(s) 146
SetI ASST 6 cut(s) 135, 167, 200, 253, 280, 312
SfaNI GCATC 2 cut(s) 177, 253
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SnaBI TACGTA 1 cut(s) 310
Sse9I AATT 1 cut(s) 327
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 287
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 171, 261
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 121, 173
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 111
TseI GCWGC 3 cut(s) 165, 269, 272
TspDTI ATGAA 3 cut(s) 17, 292, 306
TspRI CASTG 1 cut(s) 111
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.