Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

2575671 .. 2577800

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04290.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATTATAAAGTTTATAATGATAAATATACGAACATCGAAAAGTAATAATCTGAATGGTTACATTGAGCAGCTTAATAAATTGATCTGTACGTATATGGAATGGGTCCTAGCGGGGAGACTGCCTTTTTTTTTTTTTTTTTTTTTGAAAACAAAGAATACCGTGATCTCCACTCCTATTATGTGCCTTGCAAATAAGGAAAGAATTCAAATTAACATGACCATGATCAAGAAGAACCCTAGCAGTATCCTCGTTCTTTTTATCTCTTTCTGCTTTCTCTTCCCCCTGTCATGGAGTTTCAATATGGCGGCCATGGCAGCTGCGGAAAACACAACGATCCCAGTGAATGTGGGTGTTGTTGTTGACCTCAATCAAACCAGTCAGAGAGGGGAGATGTATTTAAGTTGCATCCAAATGGCCCTCGAGGACTTCTATGCATCTCATGCTCACTTCAAAACTAGGCTCGTTTTGAACACTAGGAACTCCAAACAAACTGTTGTTGGTGCAGCTTCTGCAGAAGACAACATAGAAATTCCATTAAATCAAAATAGGCGGATTACAAGTCAAAACATAGAGAGAGGACAACAGGCCAGCCCCGCACACAGACAATCAACCATTACATTCTACCACATAGAGGTCAGACATCAGGTCTGGCGGTTCCTTGAACCAGACCAAAAACCATCACAATCCTTTTTTGAGGGTCGAAGTTATTTTAAATTTTTGGATCTAAACAAAAATAATCTCTTTTTGATGAAAATGTTTTTAGAACCAATTCTTAGTAAAAATGAATTAAATTTTGGAAAAGCACTCAAAGTGTTTTTGGAACAAAAAAATATTTTTTCTAAAAGCGTTTTCAGTAATTTTAAAAGCACATCCAAACGAACCAATATAGCAGGACTGAAAATAATTCTCTTAATAAGTTTAAGAAATCCTCCCTTTTTTATTTTGTTTTCCCCACCCTATGAAAGGGCATTTAGATCTTGTATTACTCTTTCTTCCATCTTTTTTATTGTATTTTTTAATTTTGAATATTTAAAAAATTGGTTTATTTTTAATCTACTTAATATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

358

Amino Acids

41.62

Weight (kDa)

9.83

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	8, 17
AbsI	CCTCGAGG	1 cut(s)	422
AciI	CCGC	6 cut(s)	113, 308, 323, 553, 597, 655
AclWI	GGATC	2 cut(s)	331, 732
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	4 cut(s)	204, 531, 716, 793
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	291, 634, 966
AgsI	TTSAA	7 cut(s)	148, 209, 301, 454, 472, 665, 1028
AhdI	GACNNNNNGTC	1 cut(s)	647
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AluBI	AGCT	3 cut(s)	73, 320, 509
AluI	AGCT	3 cut(s)	73, 320, 509
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	331, 732
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	3 cut(s)	309, 417, 588
ApeKI	GCWGC	4 cut(s)	70, 317, 320, 506
ApoI	RAATTY	4 cut(s)	204, 531, 716, 793
Asp700I	GAANNNNTTC	2 cut(s)	204, 771
AspS9I	GGNCC	2 cut(s)	106, 418
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	4 cut(s)	82, 307, 329, 518
BccI	CCATC	2 cut(s)	688, 1007
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	4 cut(s)	110, 240, 459, 477
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	5 cut(s)	71, 309, 318, 321, 507
BlsI	GCNGC	5 cut(s)	72, 310, 319, 322, 508
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	106, 418
BmiI	GGNNCC	2 cut(s)	107, 659
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	417, 446
BmuI	ACTGGG	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 634, 966
Bse1I	ACTGG	2 cut(s)	341, 378
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	408, 872
BseLI	CCNNNNNNNGG	3 cut(s)	291, 634, 966
BseNI	ACTGG	2 cut(s)	341, 378
BseXI	GCAGC	4 cut(s)	82, 307, 329, 518
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	3 cut(s)	311, 419, 590
BsiHKCI	CYCGRG	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	291, 634, 966
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	311, 419, 590
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	6 cut(s)	113, 308, 323, 553, 597, 655
BspANI	GGCC	3 cut(s)	311, 419, 590
BspLI	GGNNCC	2 cut(s)	107, 659
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	331, 732
BsrI	ACTGG	2 cut(s)	341, 378
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	163, 496
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	2 cut(s)	443, 512
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	776
BstDSI	CCRYGG	1 cut(s)	312
BstENI	CCTNNNNNAGG	1 cut(s)	964
BstF5I	GGATG	2 cut(s)	408, 872
BstKTI	GATC	6 cut(s)	87, 168, 228, 339, 727, 980
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 317, 443, 512, 596
BstSFI	CTRYAG	1 cut(s)	513
BstSNI	TACGTA	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	82, 307, 329, 518
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	2 cut(s)	724, 977
BstYI	RGATCY	2 cut(s)	724, 977
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	311, 419, 590
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	408, 872
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	592
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr13I	GGNCC	2 cut(s)	106, 418
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	5 cut(s)	217, 223, 291, 313, 443
CviJI	RGCY	8 cut(s)	73, 311, 320, 419, 463, 509, 590, 594
CviKI_1	RGCY	8 cut(s)	73, 311, 320, 419, 463, 509, 590, 594
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	6 cut(s)	86, 167, 227, 338, 726, 979
DpnII	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
DraI	TTTAAA	3 cut(s)	715, 865, 1035
DriI	GACNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	284
Eam1105I	GACNNNNNGTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	568
Eco105I	TACGTA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	964
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	5 cut(s)	220, 226, 294, 316, 446
FatI	CATG	5 cut(s)	216, 222, 290, 312, 442
FauI	CCCGC	2 cut(s)	106, 604
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	71, 309, 318, 321, 507
FokI	GGATG	2 cut(s)	395, 859
Fsp4HI	GCNGC	5 cut(s)	71, 309, 318, 321, 507
FspBI	CTAG	4 cut(s)	110, 240, 459, 477
GluI	GCNGC	5 cut(s)	71, 309, 318, 321, 507
HaeIII	GGCC	3 cut(s)	311, 419, 590
Hin1II	CATG	5 cut(s)	220, 226, 294, 316, 446
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	54, 384, 641
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	163, 496
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	191, 408, 437, 506, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 317, 443, 512, 596
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	5 cut(s)	220, 226, 294, 316, 446
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
LpnPI	CCDG	9 cut(s)	299, 354, 391, 572, 604, 632, 637, 681, 879
Lsp1109I	GCAGC	4 cut(s)	82, 307, 329, 518
LweI	GCATC	2 cut(s)	417, 446
MaeI	CTAG	4 cut(s)	110, 240, 459, 477
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	6 cut(s)	86, 167, 227, 338, 726, 979
MboI	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
MboII	GAAGA	5 cut(s)	244, 271, 530, 987, 1060
MflI	RGATCY	2 cut(s)	724, 977
MnlI	CCTC	9 cut(s)	260, 377, 380, 418, 431, 572, 628, 691, 942
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	2 cut(s)	204, 771
MslI	CAYNNNNRTG	2 cut(s)	221, 413
MspA1I	CMGCKG	1 cut(s)	320
MwoI	GCNNNNNNNGC	5 cut(s)	314, 317, 443, 512, 596
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
NlaIII	CATG	5 cut(s)	220, 226, 294, 316, 446
NlaIV	GGNNCC	2 cut(s)	107, 659
NsiI	ATGCAT	1 cut(s)	439
PaeR7I	CTCGAG	1 cut(s)	422
PdmI	GAANNNNTTC	2 cut(s)	204, 771
PkrI	GCNGC	5 cut(s)	72, 310, 319, 322, 508
Ppu21I	YACGTR	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	106
PsiI	TTATAA	2 cut(s)	8, 17
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	107, 659
PspPI	GGNCC	2 cut(s)	106, 418
PspPPI	RGGWCCY	1 cut(s)	106
PspXI	VCTCGAGB	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	724, 977
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	221, 413
SatI	GCNGC	5 cut(s)	71, 309, 318, 321, 507
Sau3AI	GATC	6 cut(s)	84, 165, 225, 336, 724, 977
Sau96I	GGNCC	2 cut(s)	106, 418
SetI	ASST	7 cut(s)	75, 95, 322, 369, 511, 639, 651
SfaNI	GCATC	2 cut(s)	417, 446
SfcI	CTRYAG	1 cut(s)	513
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	221, 413
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SnaBI	TACGTA	1 cut(s)	93
SsiI	CCGC	6 cut(s)	113, 308, 323, 553, 597, 655
SspI	AATATT	2 cut(s)	835, 1031
SspMI	CTAG	4 cut(s)	110, 240, 459, 477
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	163, 496
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	38, 423, 703
TauI	GCSGC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	4 cut(s)	70, 317, 320, 506
TspDTI	ATGAA	3 cut(s)	767, 801, 978
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	964
XapI	RAATTY	4 cut(s)	204, 531, 716, 793
XhoI	CTCGAG	1 cut(s)	422
XmnI	GAANNNNTTC	2 cut(s)	204, 771
XspI	CTAG	4 cut(s)	110, 240, 459, 477
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.