Rmu_co8231291.1_g000001

Glutamate-gated receptor that probably acts as non- selective cation channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8231291.1
OG0000721
Physical Location & Seq
Reverse (-)
1 .. 460
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8231291.1_g000001.1.cds

Sequence Viewer

Length: 259 bp
atggcaaaccaaaagcgcttcctctggttcatcttcattattttgttcagccctgggatcgagccttcaacgacgaaagaagtgatacgagtaccagtaggagttgttcttaacttaaattcctcagtgggagctatggcagagaagtgcatgaccatggcacttgatgatttttatgctaagcatgctcattatcaaacaagactttcccttctcaccagggattcaaagaatgatgttgtttcggcagcatttgaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

86

Amino Acids

9.68

Weight (kDa)

7.92

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 17
AgsI TTSAA 3 cut(s) 69, 228, 257
AjnI CCWGG 2 cut(s) 52, 218
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 54, 220
BfoI RGCGCY 1 cut(s) 19
BisI GCNGC 1 cut(s) 249
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 54, 220
BmrFI CCNGG 2 cut(s) 54, 220
Bpu1102I GCTNAGC 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 52, 53, 156, 219
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 54, 220
BseDI CCNNGG 4 cut(s) 52, 53, 156, 219
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 137
BspPI GGATC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 4 cut(s) 52, 53, 156, 219
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 54, 220
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 124, 180
BstDSI CCRYGG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 54, 220
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 52, 218
BtgI CCRYGG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 92
CviAII CATG 3 cut(s) 151, 157, 185
CviJI RGCY 3 cut(s) 51, 64, 134
CviKI_1 RGCY 3 cut(s) 51, 64, 134
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 124, 180
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 156
Eco47III AGCGCT 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 52, 218
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 154, 160, 188
FaiI YATR 5 cut(s) 137, 152, 158, 177, 186
FatI CATG 3 cut(s) 150, 156, 184
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 19
HhaI GCGC 1 cut(s) 18
Hin1II CATG 3 cut(s) 154, 160, 188
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 75, 221
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 124, 180
Hsp92II CATG 3 cut(s) 154, 160, 188
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 10, 39, 66, 108, 205, 232
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 118
MnlI CCTC 2 cut(s) 32, 133
MseI TTAA 2 cut(s) 111, 116
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 54, 220
MvaI CCWGG 2 cut(s) 54, 220
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 57
NlaIII CATG 3 cut(s) 154, 160, 188
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PasI CCCWGGG 1 cut(s) 53
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 52, 218
PspGI CCWGG 2 cut(s) 52, 218
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 111, 116
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 54, 220
SetI ASST 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 155
SphI GCATGC 1 cut(s) 188
Sse9I AATT 1 cut(s) 118
StyD4I CCNGG 2 cut(s) 52, 218
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 111, 116
Tru9I TTAA 2 cut(s) 111, 116
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 19, 25
TspRI CASTG 1 cut(s) 132
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.