Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026037.1

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

26854 .. 30831

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026037.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggcaaaccaaaagcgcttcctctggttcatcttcattattttgttcagccctgggatcgagccttcaacgacgaaagaagtgatacgagtaccagtaggagttgttcttaacttaaattcctcagtgggagctatggcagagaagtgcatgaccatggcacttgatgatttttatgctaagcatgctcattatcaaacaagactttcccttctcaccagggattcaaagaatgatgttgtttcggcagcatttgaagagttgcaggttcgtggagtcatgagggtcggcagatctcgacaagggcctgtgcggggctgctgtgggaccataccaggatgctacagggctgctgctgggcctctcggggctgttgcgaggaaggcgagcgtgcgcgggaaaaagagagtattggtgagggcagaaggcaagcagggcttgtgggcactgcaggggcagcgaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

10.43

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccII	CGCG	1 cut(s)	396
AciI	CCGC	2 cut(s)	313, 396
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	69, 228, 257
AjnI	CCWGG	3 cut(s)	52, 218, 334
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	305, 359
ApeKI	GCWGC	5 cut(s)	248, 318, 350, 353, 457
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	18, 396
AspS9I	GGNCC	3 cut(s)	305, 327, 359
AsuHPI	GGTGA	2 cut(s)	208, 427
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	260, 305, 337, 340
BciT130I	CCWGG	3 cut(s)	54, 220, 336
BfmI	CTRYAG	2 cut(s)	343, 449
BfoI	RGCGCY	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	5 cut(s)	249, 319, 351, 354, 458
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	5 cut(s)	250, 320, 352, 355, 459
Bme1390I	CCNGG	3 cut(s)	54, 220, 336
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	3 cut(s)	305, 327, 359
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	3 cut(s)	54, 220, 336
BmsI	GCATC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	52, 53, 156, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	54, 220, 336
BseDI	CCNNGG	4 cut(s)	52, 53, 156, 219
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	260, 305, 337, 340
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	307, 361
BsiHKCI	CYCGRG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	307, 361
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	57, 293
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	2 cut(s)	313, 396
BspANI	GGCC	2 cut(s)	307, 361
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	52, 53, 156, 219
BssMI	GATC	2 cut(s)	57, 293
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	54, 220, 336
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	186, 388, 392, 431
BstDEI	CTNAG	2 cut(s)	124, 180
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 396
BstKTI	GATC	2 cut(s)	60, 296
BstMBI	GATC	2 cut(s)	57, 293
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 383, 435, 457
BstNI	CCWGG	3 cut(s)	54, 220, 336
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	52, 218, 334
BstSFI	CTRYAG	2 cut(s)	343, 449
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	260, 305, 337, 340
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	307, 361
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	132, 446
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	186, 388, 392, 431
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	2 cut(s)	18, 396
Cfr13I	GGNCC	3 cut(s)	305, 327, 359
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	4 cut(s)	151, 157, 185, 280
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	124, 180
DpnI	GATC	2 cut(s)	59, 295
DpnII	GATC	2 cut(s)	57, 293
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	327
Eco47III	AGCGCT	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	52, 218, 334
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	154, 160, 188, 283
FaiI	YATR	7 cut(s)	137, 152, 158, 177, 186, 281, 332
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	4 cut(s)	150, 156, 184, 279
FauI	CCCGC	2 cut(s)	306, 389
Fnu4HI	GCNGC	5 cut(s)	249, 319, 351, 354, 458
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	5 cut(s)	249, 319, 351, 354, 458
GlaI	GCGC	2 cut(s)	17, 395
GluI	GCNGC	5 cut(s)	249, 319, 351, 354, 458
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	307, 361
HhaI	GCGC	2 cut(s)	18, 396
Hin1II	CATG	4 cut(s)	154, 160, 188, 283
Hin6I	GCGC	2 cut(s)	16, 394
HinP1I	GCGC	2 cut(s)	16, 394
HinfI	GANTC	2 cut(s)	224, 276
HphI	GGTGA	2 cut(s)	208, 427
Hpy188III	TCNNGA	2 cut(s)	280, 297
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	75, 221, 376, 419
HpyCH4V	TGCA	3 cut(s)	150, 265, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 383, 435, 457
HpyF3I	CTNAG	2 cut(s)	124, 180
Hsp92II	CATG	4 cut(s)	154, 160, 188, 283
HspAI	GCGC	2 cut(s)	16, 394
Kzo9I	GATC	2 cut(s)	57, 293
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	4 cut(s)	260, 305, 337, 340
LweI	GCATC	1 cut(s)	329
MalI	GATC	2 cut(s)	59, 295
MboI	GATC	2 cut(s)	57, 293
MboII	GAAGA	2 cut(s)	25, 269
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	32, 133, 276, 372, 372, 411, 455
MseI	TTAA	2 cut(s)	111, 116
MslI	CAYNNNNRTG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	54, 220, 336
MvaI	CCWGG	3 cut(s)	54, 220, 336
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	185, 383, 435, 457
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	57, 293
NlaIII	CATG	4 cut(s)	154, 160, 188, 283
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	279
PasI	CCCWGGG	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	250, 320, 352, 355, 459
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	52, 218, 334
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	3 cut(s)	52, 218, 334
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	305, 327, 359
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	111, 116
SatI	GCNGC	5 cut(s)	249, 319, 351, 354, 458
Sau3AI	GATC	2 cut(s)	57, 293
Sau96I	GGNCC	3 cut(s)	305, 327, 359
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	3 cut(s)	54, 220, 336
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	2 cut(s)	136, 270
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	343, 449
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	313, 396
StyD4I	CCNGG	3 cut(s)	52, 218, 334
StyI	CCWWGG	1 cut(s)	156
TaqI	TCGA	2 cut(s)	60, 298
TasI	AATT	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	111, 116
Tru9I	TTAA	2 cut(s)	111, 116
TscAI	CASTG	2 cut(s)	132, 453
TseI	GCWGC	5 cut(s)	248, 318, 350, 353, 457
TspDTI	ATGAA	2 cut(s)	19, 25
TspRI	CASTG	2 cut(s)	132, 453
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.