Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

38111139 .. 38120757

Gene Structure 9619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCACAAAACCAAACCATCCCGGTGAATGTAGGAGTTATTCTTCATGACCTTAATTCACAGGTGGGGAAGATTTTGTTGAGCTGCATTAATATGGCCCTTTCAGACTTCTATGCTTCTCATACTTACTATAACACTAGATTGGTTTTGAACACTAGAGAGTCCAAACAAAATGTTGTCAGTGCAGCTTCTGCAGATAAAATAAAGCAGCTAGTTTCCAAAACTTCGAAAAATGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

80

Amino Acids

8.84

Weight (kDa)

9.25

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	3 cut(s)	84, 188, 211
AluI	AGCT	3 cut(s)	84, 188, 211
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	84, 185, 208
AseI	ATTAAT	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	71, 197, 220
BccI	CCATC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	23
BfaI	CTAG	3 cut(s)	138, 156, 212
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	85, 186, 209
BlsI	GCNGC	3 cut(s)	86, 187, 210
Bme1390I	CCNGG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	71, 197, 220
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	227
BssMI	GATC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	71, 197, 220
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	4 cut(s)	84, 98, 188, 211
CviKI_1	RGCY	4 cut(s)	84, 98, 188, 211
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	48, 95, 114, 123, 132
FatI	CATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	85, 186, 209
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	3 cut(s)	85, 186, 209
FspBI	CTAG	3 cut(s)	138, 156, 212
GluI	GCNGC	3 cut(s)	85, 186, 209
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	87, 185, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	2 cut(s)	36, 47
Lsp1109I	GCAGC	3 cut(s)	71, 197, 220
MaeI	CTAG	3 cut(s)	138, 156, 212
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	35, 82
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	54, 90
MslI	CAYNNNNRTG	2 cut(s)	23, 92
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	227
PagI	TCATGA	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	86, 187, 210
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	23, 92
SaqAI	TTAA	2 cut(s)	54, 90
SatI	GCNGC	3 cut(s)	85, 186, 209
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	5 cut(s)	54, 66, 86, 190, 213
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	227
SgeI	CNNG	7 cut(s)	34, 35, 59, 74, 150, 168, 224
SmiMI	CAYNNNNRTG	2 cut(s)	23, 92
Sse9I	AATT	1 cut(s)	55
SspMI	CTAG	3 cut(s)	138, 156, 212
StyD4I	CCNGG	1 cut(s)	21
TaqI	TCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	54, 90
Tru9I	TTAA	2 cut(s)	54, 90
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	3 cut(s)	84, 185, 208
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	90
XspI	CTAG	3 cut(s)	138, 156, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.