Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

4463482 .. 4463809

Gene Structure 328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGACGCCAACTTCCTAATCAACCTTGGTGACAAAGCACATGTTCCCATAATCTCATTTTCAGCAACAAGTCCTTCTCTCACTTCAATCCGTAGCCCATACTTTTTTCGAGCTGCACAAAATGACTCTTTGCAAGTGAAAGCCACAAGCGACATCATTCAAACCTTTGGTTGGAGAAAAGTAGTCCCCATCTACGTCGACAACGAGTTTGGAGAAGGAGTCATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

76

Amino Acids

8.4

Weight (kDa)

5.55

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	3 - 75	2.5e-21	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	87, 161
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsuHPI	GGTGA	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	222
CseI	GACGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	3 cut(s)	96, 113, 143
CviKI_1	RGCY	3 cut(s)	96, 113, 143
Eco130I	CCWWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	42, 50, 100
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	125, 219
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	84, 209
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	116, 133
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	119, 228
MmeI	TCCRAC	1 cut(s)	152
MseI	TTAA	1 cut(s)	229
NlaIII	CATG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	44
PciI	ACATGT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	2 cut(s)	119, 227
PpsI	GAGTC	2 cut(s)	119, 227
PscI	ACATGT	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	229
SatI	GCNGC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	119, 228
SetI	ASST	4 cut(s)	27, 115, 167, 198
SgeI	CNNG	7 cut(s)	38, 53, 81, 122, 146, 159, 217
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	109, 198
Tru1I	TTAA	1 cut(s)	229
Tru9I	TTAA	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.