FvH4_1g16420

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000351
Physical Location & Seq
Forward (+)
9479722 .. 9480744
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16420.t1

Sequence Viewer

Length: 720 bp
ATGGATTATGGAAAAGAGATTCAAATGCTACTGCGCAGGAATGCTGAAGAGTCTTTTGTTCCAGGTTTAGTTTCAATCGGGCCAATTCACCACGGAGAAGATAACCTGAAAGCGTTGGAAGAAGTTAAACTATTGTATTTGCAAGGTCTCCTTGATCGAAAGCCAACACCTGCGACTAGCCTGCACAACTTTGTCAAAGAAATTAGAAGCATGGAACAAGATTGCCGCAACTGTTATGATGAAAAGTTCCCTCATTTTTCTAGTGAAAAATTTGTGGAAATGATGGTGGTTGATGGTTGCTTTGTTATTGAATTGTTCCGCAAGTTTTTAGGAGAGGTTCTCAAACCTAAGGGTGATCCTGTGTTTTCCGAGTCATGGATGCTCACTGCAATTAAAACCGACTTGCTTTTACTTGAAAACCAGCTTCCTTGGAGAGTTCTTAACAGTTTATTTCACCTCACATCTGATGCCGAAGCTGGCAAGCTTCCTCTTACTGAGCTTACTCTTAAGTATTTTAAGGGGTGCACACGGGGGTGGAGTGATCTACGTGCTATTAATGCAGCGTTACCACAGCATCTGCTGGACTTTTTATGTAATTCTTTACATGAATCGTCTGCTGAATCAGAGACTCGGAACTATGGTAAACGGACCTCAATTCTCTCTGCAATAGAGCTTGATCAGCATGGAGTCCTTATTAGTCCTGGTTCCGATATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

240

Amino Acids

27.14

Weight (kDa)

5.52

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 9 - 233 1e-53 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 718
AarI CACCTGC 1 cut(s) 178
Acc16I TGCGCA 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 2 cut(s) 226, 319
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 375
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 4 cut(s) 23, 75, 311, 416
AjnI CCWGG 2 cut(s) 61, 700
AleI CACNNNNGTG 1 cut(s) 532
AluBI AGCT 5 cut(s) 424, 476, 484, 499, 673
AluI AGCT 5 cut(s) 424, 476, 484, 499, 673
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 2 cut(s) 152, 620
Alw44I GTGCAC 1 cut(s) 523
AlwI GGATC 1 cut(s) 350
AlwNI CAGNNNCTG 1 cut(s) 577
AoxI GGCC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 523
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 269
AseI ATTAAT 1 cut(s) 555
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 80, 648
AsuHPI GGTGA 3 cut(s) 80, 365, 446
AvaII GGWCC 1 cut(s) 648
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 277, 287
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 2 cut(s) 63, 702
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 152, 620
BfaI CTAG 2 cut(s) 177, 261
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 2 cut(s) 226, 561
BlsI GCNGC 2 cut(s) 227, 562
Bme1390I CCNGG 2 cut(s) 63, 702
Bme18I GGWCC 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 80, 648
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 63, 702
BmsI GCATC 3 cut(s) 369, 457, 583
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 91, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse21I CCTNAGG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 63, 702
BseDI CCNNGG 2 cut(s) 91, 428
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 2 cut(s) 152, 620
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 4 cut(s) 154, 355, 541, 676
BspACI CCGC 2 cut(s) 226, 319
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 91, 428
BssMI GATC 4 cut(s) 154, 355, 541, 676
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 63, 702
Bst4CI ACNGT 2 cut(s) 233, 446
Bst6I CTCTTC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 182, 478, 482
BstDEI CTNAG 2 cut(s) 348, 495
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 4 cut(s) 157, 358, 544, 679
BstMAI GTCTC 2 cut(s) 152, 620
BstMBI GATC 4 cut(s) 154, 355, 541, 676
BstMWI GCNNNNNNNGC 2 cut(s) 557, 679
BstNI CCWGG 2 cut(s) 63, 702
BstSCI CCNGG 2 cut(s) 61, 700
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 572
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 182, 478, 482
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 80, 648
CviAII CATG 4 cut(s) 211, 375, 605, 683
CviJI RGCY 8 cut(s) 82, 163, 180, 424, 476, 484, 499, 673
CviKI_1 RGCY 8 cut(s) 82, 163, 180, 424, 476, 484, 499, 673
DdeI CTNAG 2 cut(s) 348, 495
DpnI GATC 4 cut(s) 156, 357, 543, 678
DpnII GATC 4 cut(s) 154, 355, 541, 676
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 648
Eco57I CTGAAG 1 cut(s) 66
Eco81I CCTNAGG 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 61, 700
EcoRV GATATC 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 4 cut(s) 214, 378, 608, 686
FaiI YATR 9 cut(s) 9, 212, 237, 376, 592, 606, 639, 684, 718
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 4 cut(s) 210, 374, 604, 682
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 2 cut(s) 226, 561
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 226, 561
FspBI CTAG 2 cut(s) 177, 261
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 226, 561
HaeIII GGCC 1 cut(s) 82
HhaI GCGC 1 cut(s) 36
Hin1II CATG 4 cut(s) 214, 378, 608, 686
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 7 cut(s) 19, 50, 371, 608, 620, 628, 687
HphI GGTGA 3 cut(s) 80, 365, 446
Hpy166II GTNNAC 2 cut(s) 525, 644
Hpy188I TCNGA 5 cut(s) 370, 466, 625, 633, 709
Hpy8I GTNNAC 2 cut(s) 525, 644
HpyCH4III ACNGT 2 cut(s) 233, 446
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 6 cut(s) 142, 184, 389, 525, 560, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 679
HpyF3I CTNAG 2 cut(s) 348, 495
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 4 cut(s) 214, 378, 608, 686
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 4 cut(s) 154, 355, 541, 676
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 3 cut(s) 369, 457, 583
MaeI CTAG 2 cut(s) 177, 261
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 1 cut(s) 564
MalI GATC 4 cut(s) 156, 357, 543, 678
MboI GATC 4 cut(s) 154, 355, 541, 676
MboII GAAGA 3 cut(s) 59, 110, 131
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 7 cut(s) 84, 201, 269, 311, 390, 595, 654
MlyI GAGTC 4 cut(s) 59, 380, 622, 696
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 261, 328, 467, 498, 661
MseI TTAA 6 cut(s) 126, 393, 441, 507, 516, 555
MslI CAYNNNNRTG 1 cut(s) 532
MspCI CTTAAG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 63, 702
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 63, 702
MwoI GCNNNNNNNGC 2 cut(s) 557, 679
NdeII GATC 4 cut(s) 154, 355, 541, 676
NlaIII CATG 4 cut(s) 214, 378, 608, 686
NlaIV GGNNCC 1 cut(s) 706
NsbI TGCGCA 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 532
PaqCI CACCTGC 1 cut(s) 178
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 19, 608, 620
PkrI GCNGC 2 cut(s) 227, 562
PleI GAGTC 4 cut(s) 58, 379, 622, 695
PpsI GAGTC 4 cut(s) 58, 379, 622, 695
Ppu21I YACGTR 1 cut(s) 548
PshBI ATTAAT 1 cut(s) 555
PsiI TTATAA 1 cut(s) 718
Psp6I CCWGG 2 cut(s) 61, 700
PspGI CCWGG 2 cut(s) 61, 700
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 80, 648
PstNI CAGNNNCTG 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 532
SaqAI TTAA 6 cut(s) 126, 393, 441, 507, 516, 555
SatI GCNGC 2 cut(s) 226, 561
Sau3AI GATC 4 cut(s) 154, 355, 541, 676
Sau96I GGNCC 2 cut(s) 80, 648
SchI GAGTC 4 cut(s) 59, 380, 622, 696
ScrFI CCNGG 2 cut(s) 63, 702
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 3 cut(s) 369, 457, 583
SinI GGWCC 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 7 cut(s) 84, 201, 269, 311, 390, 595, 654
SsiI CCGC 2 cut(s) 226, 319
SspMI CTAG 2 cut(s) 177, 261
StyD4I CCNGG 2 cut(s) 61, 700
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 233, 446
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 157
TasI AATT 7 cut(s) 84, 201, 269, 311, 390, 595, 654
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 3 cut(s) 19, 608, 620
Tru1I TTAA 6 cut(s) 126, 393, 441, 507, 516, 555
Tru9I TTAA 6 cut(s) 126, 393, 441, 507, 516, 555
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 560
TspDTI ATGAA 2 cut(s) 255, 621
TspGWI ACGGA 2 cut(s) 108, 661
TspRI CASTG 1 cut(s) 391
Vha464I CTTAAG 1 cut(s) 506
VneI GTGCAC 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 648
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 1 cut(s) 269
XspI CTAG 2 cut(s) 177, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.